Variant report

Variant	rs12541961
Chromosome Location	chr8:87222749-87222750
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87216830..87219040-chr8:87220286..87222981,2	MCF-7	breast:

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10091781	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10097379	0.87[ASN][1000 genomes]
rs10098643	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10108391	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10111656	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10112474	0.91[ASN][1000 genomes]
rs10956310	0.81[ASN][1000 genomes]
rs11777902	0.87[ASN][1000 genomes]
rs11787431	0.86[ASN][1000 genomes]
rs12115123	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12155639	0.88[EUR][1000 genomes]
rs12155804	0.89[EUR][1000 genomes]
rs12155824	0.88[EUR][1000 genomes]
rs12155882	0.88[EUR][1000 genomes]
rs12156219	0.88[EUR][1000 genomes]
rs12541053	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12541292	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12541468	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12541480	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12541499	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12544098	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12546120	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12546618	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12548440	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13254996	0.87[ASN][1000 genomes]
rs13259716	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13262822	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13265507	0.88[EUR][1000 genomes]
rs13267165	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13267261	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13268911	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13272119	0.82[EUR][1000 genomes]
rs13272356	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13272593	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13276090	0.89[EUR][1000 genomes]
rs13276129	0.89[EUR][1000 genomes]
rs13280528	0.81[ASN][1000 genomes]
rs13282492	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2976187	0.85[ASN][1000 genomes]
rs2976190	0.86[ASN][1000 genomes]
rs33979484	0.89[EUR][1000 genomes]
rs34122951	0.90[EUR][1000 genomes]
rs34522097	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34660447	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34683419	0.91[EUR][1000 genomes]
rs34733066	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34744391	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34844115	0.89[EUR][1000 genomes]
rs34847457	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35141817	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35174822	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35292130	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35330967	0.88[EUR][1000 genomes]
rs35332272	0.92[EUR][1000 genomes]
rs35715881	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35825431	0.82[EUR][1000 genomes]
rs35844270	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35978872	0.92[EUR][1000 genomes]
rs3923638	0.93[ASN][1000 genomes]
rs4076880	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4076881	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4311641	0.88[EUR][1000 genomes]
rs4319071	0.92[EUR][1000 genomes]
rs4355748	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4443642	0.89[EUR][1000 genomes]
rs4480105	0.88[EUR][1000 genomes]
rs4515529	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4571715	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4581031	0.89[EUR][1000 genomes]
rs4596629	0.87[ASN][1000 genomes]
rs4596630	0.85[ASN][1000 genomes]
rs58965951	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59777373	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6470428	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6470714	0.92[ASN][1000 genomes]
rs6470732	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470733	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67091588	0.88[ASN][1000 genomes]
rs67149475	0.81[ASN][1000 genomes]
rs67650717	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6981788	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982731	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6986074	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6990582	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6990782	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6991607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6999252	0.85[ASN][1000 genomes]
rs7001524	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7005558	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7010778	0.87[ASN][1000 genomes]
rs7011242	0.81[ASN][1000 genomes]
rs7013212	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7013268	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7013552	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7014188	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7016450	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7017607	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7017743	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72606619	0.89[EUR][1000 genomes]
rs72606620	0.89[EUR][1000 genomes]
rs72606621	0.89[EUR][1000 genomes]
rs72606622	0.88[EUR][1000 genomes]
rs72606623	0.89[EUR][1000 genomes]
rs72606624	0.89[EUR][1000 genomes]
rs72606625	0.89[EUR][1000 genomes]
rs72606626	0.88[EUR][1000 genomes]
rs72606627	0.87[EUR][1000 genomes]
rs72606629	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72606630	0.81[ASN][1000 genomes]
rs7350116	0.81[ASN][1000 genomes]
rs7461255	0.88[EUR][1000 genomes]
rs7823544	0.85[EUR][1000 genomes]
rs7825985	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7827938	0.84[EUR][1000 genomes]
rs7846210	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9969464	0.89[EUR][1000 genomes]
rs9969498	0.88[EUR][1000 genomes]
rs9969499	0.88[EUR][1000 genomes]
rs9969529	0.88[EUR][1000 genomes]
rs9969581	0.83[EUR][1000 genomes]
rs9969582	0.89[EUR][1000 genomes]
rs9969612	0.85[EUR][1000 genomes]
rs9969617	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv611674	chr8:87156172-87315920	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027648	chr8:87161437-87319476	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1020485	chr8:87167184-87330873	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1023114	chr8:87167184-87335197	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1033960	chr8:87167790-87334194	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv1016050	chr8:87167790-87335197	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv6290	chr8:87175740-87229808	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1016177	chr8:87177368-87319476	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv1023772	chr8:87177368-87334194	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv1031874	chr8:87177368-87335197	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv1030401	chr8:87177368-87337260	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv1033007	chr8:87185458-87319476	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	esv2761445	chr8:87185470-87335197	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
20	nsv465733	chr8:87187050-87302328	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
21	nsv611675	chr8:87187050-87302328	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv519507	chr8:87187195-87333968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
23	nsv1020459	chr8:87200116-87330912	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
24	nsv539660	chr8:87200116-87330912	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
25	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
26	esv2752341	chr8:87205384-87245084	Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
27	nsv611708	chr8:87205885-87333968	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
28	nsv1021125	chr8:87208343-87331289	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
29	nsv539661	chr8:87208343-87331289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87222400-87222800	Enhancers	Liver	Liver
2	chr8:87222400-87223600	Enhancers	HepG2	liver

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