Variant report

Variant	rs12544284
Chromosome Location	chr8:90258323-90258324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10103974	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10808511	0.89[EUR][1000 genomes]
rs10955980	0.93[EUR][1000 genomes]
rs10955981	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10955982	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10955983	0.91[EUR][1000 genomes]
rs11985299	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12541334	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12544184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12544420	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12544874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547425	0.93[EUR][1000 genomes]
rs12547629	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12548260	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12549626	0.93[EUR][1000 genomes]
rs12676723	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12680830	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1479907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16893311	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs16893577	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16893581	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1905320	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2167310	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2338694	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28463376	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28493365	0.93[EUR][1000 genomes]
rs318285	0.91[EUR][1000 genomes]
rs57319541	0.91[EUR][1000 genomes]
rs58701424	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59583486	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59776336	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60997794	0.81[AMR][1000 genomes]
rs62532521	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62532535	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62532536	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62532541	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6469928	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6469929	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6994681	0.81[AMR][1000 genomes]
rs6999851	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7015077	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7015317	0.93[EUR][1000 genomes]
rs7813237	0.93[EUR][1000 genomes]
rs7817834	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7829316	0.93[EUR][1000 genomes]
rs7835496	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7836610	0.81[AMR][1000 genomes]
rs7841476	0.89[EUR][1000 genomes]
rs9642853	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032886	chr8:90253748-90398240	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90248600-90259600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr8:90250000-90259600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr8:90251400-90259400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr8:90255800-90265800	Weak transcription	NHDF-Ad	bronchial
5	chr8:90256400-90258800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr8:90256600-90259400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr8:90256800-90258800	Enhancers	Primary T cells from cord blood	blood
8	chr8:90257400-90258400	Weak transcription	Dnd41	blood
9	chr8:90257600-90259200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:90258200-90258800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:90258200-90259200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links