Variant report

Variant	rs12545426
Chromosome Location	chr8:59453461-59453462
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12547751	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16923629	0.87[MEX][hapmap];0.85[TSI][hapmap]
rs34604333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7015319	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59440400-59465200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:59448800-59455200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:59451000-59455000	Enhancers	Fetal Brain Male	brain
4	chr8:59451000-59456400	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:59453000-59454400	Enhancers	Fetal Brain Female	brain
6	chr8:59453000-59462200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:59453200-59456600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:59453200-59456600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:59453400-59453600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:59453400-59455200	Weak transcription	Fetal Stomach	stomach
11	chr8:59453400-59457000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links