Variant report

Variant	rs16923629
Chromosome Location	chr8:59564000-59564001
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59561564..59565791-chr8:59570091..59573890,6	MCF-7	breast:
2	chr8:59558665..59561623-chr8:59562018..59565926,5	K562	blood:
3	chr8:59554333..59557922-chr8:59563226..59566504,4	K562	blood:
4	chr8:59467543..59471548-chr8:59563276..59565061,3	K562	blood:

Variant related genes	Relation type
ENSG00000035681	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12545426	0.87[MEX][hapmap];0.85[TSI][hapmap]
rs7015319	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:129 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59510400-59570200	Weak transcription	Colonic Mucosa	Colon
2	chr8:59522000-59570200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:59536200-59564000	Weak transcription	Fetal Brain Male	brain
4	chr8:59543200-59564000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:59543200-59570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:59543200-59570200	Weak transcription	Fetal Kidney	kidney
7	chr8:59543400-59564000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:59543400-59564200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:59543400-59564200	Weak transcription	Right Ventricle	heart
10	chr8:59543400-59570000	Weak transcription	Brain Angular Gyrus	brain
11	chr8:59545600-59564000	Weak transcription	Brain Hippocampus Middle	brain
12	chr8:59547200-59570200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:59547600-59564000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr8:59551000-59570400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:59552600-59570400	Weak transcription	Liver	Liver
16	chr8:59552800-59564000	Weak transcription	Fetal Lung	lung
17	chr8:59554400-59570000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr8:59554600-59569600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:59555200-59564800	Weak transcription	NHLF	lung
20	chr8:59555200-59565000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:59556200-59569600	Weak transcription	Ovary	ovary
22	chr8:59556400-59564200	Weak transcription	Right Atrium	heart
23	chr8:59556400-59565000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:59556800-59569800	Weak transcription	HUVEC	blood vessel
25	chr8:59558400-59569600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:59558600-59565000	Weak transcription	Spleen	Spleen
27	chr8:59559600-59564600	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr8:59559800-59564200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:59560200-59564200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr8:59560200-59564800	Weak transcription	Pancreas	Pancrea
31	chr8:59560200-59569600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr8:59560200-59569600	Weak transcription	Hela-S3	cervix
33	chr8:59560200-59570200	Weak transcription	HSMM	muscle
34	chr8:59560200-59570200	Weak transcription	NHEK	skin
35	chr8:59560200-59571000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr8:59560400-59564000	Weak transcription	Fetal Heart	heart
37	chr8:59560400-59569600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:59560600-59569800	Weak transcription	Osteobl	bone
39	chr8:59560800-59569600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:59561400-59564000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr8:59561400-59564600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr8:59561400-59565000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr8:59561400-59569600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr8:59561400-59569800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr8:59561400-59570400	Weak transcription	Lung	lung
46	chr8:59561400-59571000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr8:59561600-59564800	Weak transcription	Fetal Brain Female	brain
48	chr8:59561600-59565000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:59561600-59565000	Genic enhancers	K562	blood
50	chr8:59561600-59569600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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