Variant report

Variant	rs12546354
Chromosome Location	chr8:35535803-35535804
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1001355	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10503982	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10954989	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11985782	0.82[ASN][1000 genomes]
rs12543831	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12543917	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12545460	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12548530	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12548652	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12549599	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12549774	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12550434	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12678392	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12679845	0.86[EUR][1000 genomes]
rs16875853	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16875855	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16884235	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16884240	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16884241	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16884255	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16884258	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16884264	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16884266	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16884280	0.86[EUR][1000 genomes]
rs16884285	0.86[EUR][1000 genomes]
rs16884373	0.86[EUR][1000 genomes]
rs2406165	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2897334	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3824287	0.86[EUR][1000 genomes]
rs4739421	0.88[CHB][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4739422	0.86[EUR][1000 genomes]
rs4739423	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4739424	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61357978	0.86[EUR][1000 genomes]
rs73583045	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73583047	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73583049	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73584844	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73584850	0.86[EUR][1000 genomes]
rs73586708	0.86[EUR][1000 genomes]
rs7818904	0.86[EUR][1000 genomes]
rs7846338	0.86[EUR][1000 genomes]
rs966868	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs966869	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv831285	chr8:35485874-35648117	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35530200-35562800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:35530400-35541800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:35531000-35579600	Weak transcription	Fetal Brain Female	brain
4	chr8:35533200-35542200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:35534800-35548000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:35535200-35538600	Weak transcription	Fetal Kidney	kidney

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