Variant report

Variant	rs1254673
Chromosome Location	chr10:44473793-44473794
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1147904	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147907	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413005	0.88[ASN][1000 genomes]
rs1254674	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1254848	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1254860	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1380838	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1460542	0.99[ASN][1000 genomes]
rs1977341	0.96[ASN][1000 genomes]
rs2279555	0.81[AFR][1000 genomes]
rs2798998	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73283848	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1254673	GPRIN2	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44462000-44474400	Weak transcription	Left Ventricle	heart
2	chr10:44462400-44475200	Weak transcription	Right Atrium	heart
3	chr10:44466400-44476000	Weak transcription	Right Ventricle	heart
4	chr10:44469800-44482800	Weak transcription	Gastric	stomach
5	chr10:44470000-44475000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:44470200-44474400	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:44472600-44476800	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:44472600-44477200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:44472800-44473800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr10:44473000-44473800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr10:44473000-44474400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:44473200-44473800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:44473200-44473800	Enhancers	Adipose Nuclei	Adipose
14	chr10:44473200-44474200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:44473600-44473800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:44473600-44475000	Weak transcription	Spleen	Spleen
17	chr10:44473600-44475200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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