Variant report

Variant	rs12547598
Chromosome Location	chr8:2148832-2148833
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1043221	1.00[CHB][hapmap]
rs1043225	1.00[CHB][hapmap]
rs1043226	1.00[CHB][hapmap]
rs11136467	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17684547	1.00[ASN][1000 genomes]
rs17751791	1.00[ASN][1000 genomes]
rs34397313	1.00[ASN][1000 genomes]
rs35528480	1.00[ASN][1000 genomes]
rs3824186	1.00[CHB][hapmap]
rs7386994	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2144000-2150600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:2145800-2153400	Enhancers	Primary T cells from cord blood	blood
3	chr8:2146200-2152800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:2146600-2149400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr8:2146600-2149400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr8:2146600-2150200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr8:2147000-2149200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:2147000-2149400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:2147000-2149400	Weak transcription	Thymus	Thymus
10	chr8:2147200-2149200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr8:2147800-2149400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr8:2148400-2149400	Weak transcription	Fetal Thymus	thymus
13	chr8:2148800-2149000	ZNF genes & repeats	Pancreas	Pancrea
14	chr8:2148800-2149600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr8:2148800-2149800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:2148800-2150200	Weak transcription	Fetal Brain Male	brain
17	chr8:2148800-2150600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr8:2148800-2150800	Enhancers	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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