Variant report

Variant	rs12547897
Chromosome Location	chr8:64799852-64799853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12543529	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12545994	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12549772	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12550178	0.92[EUR][1000 genomes]
rs12680276	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1520917	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16930666	0.89[EUR][1000 genomes]
rs1985894	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2217020	0.92[EUR][1000 genomes]
rs34691565	0.85[EUR][1000 genomes]
rs4737186	0.92[EUR][1000 genomes]
rs4737187	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4737661	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6988399	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs705988	0.80[EUR][1000 genomes]
rs705990	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8357	chr8:64783560-64852075	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64799200-64800400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:64799600-64801400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:64799800-64801600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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