Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12543529	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12545994	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12547897	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12549772	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12550178	0.89[EUR][1000 genomes]
rs12675807	0.91[ASN][1000 genomes]
rs12680276	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13254613	0.93[ASN][1000 genomes]
rs1520917	0.89[EUR][1000 genomes]
rs16930666	0.87[EUR][1000 genomes]
rs2217020	0.89[EUR][1000 genomes]
rs34691565	0.83[EUR][1000 genomes]
rs4737186	0.89[EUR][1000 genomes]
rs4737187	0.91[EUR][1000 genomes]
rs4737661	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982653	0.86[ASN][1000 genomes]
rs6988399	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994250	0.91[ASN][1000 genomes]
rs705988	0.85[ASN][1000 genomes]
rs705990	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8357	chr8:64783560-64852075	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64802200-64806800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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