Variant report

Variant	rs12548141
Chromosome Location	chr8:91849557-91849558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10108616	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10808631	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10956784	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10956785	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1125229	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12542103	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12549909	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13261725	0.84[EUR][1000 genomes]
rs13264873	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13268798	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13279759	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1352160	0.82[ASN][1000 genomes]
rs1354517	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1354518	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1354519	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1354520	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1386107	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1386108	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1386109	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1394501	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486466	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1504787	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1504789	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504795	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1504796	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1604917	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1604918	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1604919	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16905567	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16905571	0.82[EUR][1000 genomes]
rs1857752	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1910726	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1910727	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1982785	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2062880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2129260	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34480586	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34637621	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35234301	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35918434	0.82[EUR][1000 genomes]
rs3890611	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4517081	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4735417	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4735418	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4735419	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4735428	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55735096	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6471257	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471258	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471259	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471260	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471261	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6471262	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6986276	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6993462	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999838	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7014480	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7813402	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7821107	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7824149	0.84[AFR][1000 genomes]
rs7829663	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7830264	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs901382	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs937738	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs937739	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9643317	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9969519	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91847400-91849600	Enhancers	Brain Anterior Caudate	brain
2	chr8:91847400-91850200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:91847400-91850800	Enhancers	Brain Hippocampus Middle	brain
4	chr8:91848400-91849600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:91848600-91849800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:91849000-91851800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr8:91849200-91852600	Enhancers	Brain Substantia Nigra	brain
8	chr8:91849400-91849600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:91849400-91849600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:91849400-91850000	Enhancers	Brain Angular Gyrus	brain
11	chr8:91849400-91850600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:91849400-91852000	Enhancers	Brain Cingulate Gyrus	brain

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