Variant report

Variant	rs1394502
Chromosome Location	chr8:91848453-91848454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10108616	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10808631	1.00[CEU][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10956784	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10956785	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1125229	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12542103	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12548141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12549909	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13261725	0.84[EUR][1000 genomes]
rs13264873	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13268798	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13279759	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1352160	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1354517	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1354518	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1354519	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1354520	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1386107	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1386108	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1386109	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1394501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486466	1.00[CEU][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1504787	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1504789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1504795	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1504796	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1604917	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1604918	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1604919	1.00[CEU][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16905567	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16905571	0.82[EUR][1000 genomes]
rs1857752	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1910726	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1910727	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1982785	1.00[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2062880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2129260	1.00[CEU][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34480586	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34637621	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35234301	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35918434	0.82[EUR][1000 genomes]
rs3890611	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4517081	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4735417	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4735418	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4735419	1.00[CEU][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4735428	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55735096	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6471257	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6471258	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6471259	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6471260	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6471261	1.00[CEU][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6471262	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6986276	1.00[CEU][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6993462	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6999838	1.00[CEU][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7014480	1.00[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7813402	1.00[CEU][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7821107	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7824149	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7829663	0.94[CEU][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7830264	1.00[CEU][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7844134	0.93[YRI][hapmap]
rs901382	1.00[CEU][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs937738	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs937739	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9643317	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs978559	0.84[JPT][hapmap]
rs978560	0.89[JPT][hapmap]
rs9969519	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91832000-91849400	Weak transcription	Brain Angular Gyrus	brain
2	chr8:91847400-91848600	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr8:91847400-91849600	Enhancers	Brain Anterior Caudate	brain
4	chr8:91847400-91850200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:91847400-91850800	Enhancers	Brain Hippocampus Middle	brain
6	chr8:91847600-91848600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:91848200-91849200	Weak transcription	Brain Substantia Nigra	brain
8	chr8:91848200-91849400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:91848200-91849400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:91848200-91849400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:91848400-91848600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr8:91848400-91848800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:91848400-91849400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:91848400-91849600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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