Variant report

Variant	rs1254852
Chromosome Location	chr10:44411868-44411869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1147901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1254850	1.00[EUR][1000 genomes]
rs1254856	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1270513	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1749801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1778431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2613103	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2764797	0.92[EUR][1000 genomes]
rs2798991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2798992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2798994	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2798995	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs984001	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44406400-44417800	Weak transcription	Right Atrium	heart
2	chr10:44406800-44421800	Weak transcription	Fetal Heart	heart
3	chr10:44408200-44424000	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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