Variant report

Variant	rs984001
Chromosome Location	chr10:44429319-44429320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11238682	1.00[CHD][hapmap]
rs11238720	1.00[ASN][1000 genomes]
rs11238721	1.00[ASN][1000 genomes]
rs1147901	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12264669	1.00[ASN][1000 genomes]
rs12266918	1.00[ASN][1000 genomes]
rs1254850	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1254852	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1254856	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1270513	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578855	1.00[ASN][1000 genomes]
rs17154499	1.00[ASN][1000 genomes]
rs17154520	1.00[ASN][1000 genomes]
rs17154571	1.00[ASN][1000 genomes]
rs1749801	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1778431	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1947673	1.00[ASN][1000 genomes]
rs2025622	1.00[ASN][1000 genomes]
rs2025623	1.00[ASN][1000 genomes]
rs2209487	1.00[ASN][1000 genomes]
rs2613103	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764797	0.86[EUR][1000 genomes]
rs2798991	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2798992	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2798994	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798995	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28475171	1.00[ASN][1000 genomes]
rs2863233	1.00[ASN][1000 genomes]
rs28654354	1.00[ASN][1000 genomes]
rs61861590	1.00[ASN][1000 genomes]
rs7071492	1.00[ASN][1000 genomes]
rs7075076	1.00[ASN][1000 genomes]
rs7075813	1.00[ASN][1000 genomes]
rs7078623	1.00[ASN][1000 genomes]
rs7079939	1.00[ASN][1000 genomes]
rs7086449	1.00[ASN][1000 genomes]
rs7087019	1.00[ASN][1000 genomes]
rs7096797	1.00[ASN][1000 genomes]
rs73267817	1.00[ASN][1000 genomes]
rs74138919	1.00[ASN][1000 genomes]
rs7918642	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44422800-44437600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44427200-44434400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:44429200-44429400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:44429200-44429600	Enhancers	NHDF-Ad	bronchial
5	chr10:44429200-44429800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:44429200-44429800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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