Variant report

Variant	rs7096797
Chromosome Location	chr10:44320304-44320305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11238720	1.00[ASN][1000 genomes]
rs11238721	1.00[ASN][1000 genomes]
rs12264669	1.00[ASN][1000 genomes]
rs12266918	1.00[ASN][1000 genomes]
rs1254856	1.00[ASN][1000 genomes]
rs1270513	1.00[ASN][1000 genomes]
rs1578855	1.00[ASN][1000 genomes]
rs17154499	1.00[ASN][1000 genomes]
rs17154520	1.00[ASN][1000 genomes]
rs17154571	1.00[ASN][1000 genomes]
rs1947673	1.00[ASN][1000 genomes]
rs2025622	1.00[ASN][1000 genomes]
rs2025623	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs2209487	1.00[ASN][1000 genomes]
rs2613103	1.00[ASN][1000 genomes]
rs2798994	1.00[ASN][1000 genomes]
rs2798995	1.00[ASN][1000 genomes]
rs28475171	1.00[ASN][1000 genomes]
rs2863233	1.00[ASN][1000 genomes]
rs28654354	1.00[ASN][1000 genomes]
rs61861590	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071492	1.00[ASN][1000 genomes]
rs7075076	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075813	1.00[ASN][1000 genomes]
rs7078623	1.00[ASN][1000 genomes]
rs7079939	1.00[ASN][1000 genomes]
rs7086449	1.00[ASN][1000 genomes]
rs7087019	1.00[ASN][1000 genomes]
rs73267817	1.00[ASN][1000 genomes]
rs74138919	1.00[ASN][1000 genomes]
rs7918642	1.00[ASN][1000 genomes]
rs984001	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7096797	BTBD6	trans	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44314600-44323800	Weak transcription	Thymus	Thymus
2	chr10:44314800-44323200	Weak transcription	Gastric	stomach
3	chr10:44315200-44321800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44316400-44321000	Enhancers	Fetal Muscle Leg	muscle
5	chr10:44316400-44321400	Enhancers	Adipose Nuclei	Adipose
6	chr10:44317400-44321200	Enhancers	NHDF-Ad	bronchial
7	chr10:44317800-44320800	Enhancers	NHLF	lung
8	chr10:44317800-44320800	Enhancers	Osteobl	bone
9	chr10:44317800-44321400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:44317800-44321400	Enhancers	Left Ventricle	heart
11	chr10:44318000-44321200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:44318000-44321400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:44318200-44320800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:44318200-44320800	Weak transcription	Aorta	Aorta
15	chr10:44318400-44321200	Enhancers	Fetal Heart	heart
16	chr10:44318600-44320400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:44318600-44321000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:44319400-44320400	Weak transcription	Ovary	ovary
19	chr10:44319400-44320800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:44319400-44320800	Weak transcription	Right Atrium	heart
21	chr10:44319400-44320800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:44319600-44320800	Weak transcription	Right Ventricle	heart
23	chr10:44320000-44321200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr10:44320000-44321200	Enhancers	Fetal Muscle Trunk	muscle
25	chr10:44320000-44322400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr10:44320200-44320600	Enhancers	HepG2	liver
27	chr10:44320200-44321000	Weak transcription	Lung	lung

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