Variant report

Variant	rs12266918
Chromosome Location	chr10:44318235-44318236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44316802..44318990-chr10:44333723..44335318,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11238720	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238721	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264669	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254856	1.00[ASN][1000 genomes]
rs1270513	1.00[ASN][1000 genomes]
rs1578855	1.00[ASN][1000 genomes]
rs17154499	1.00[ASN][1000 genomes]
rs17154520	1.00[ASN][1000 genomes]
rs17154571	1.00[ASN][1000 genomes]
rs1947673	1.00[ASN][1000 genomes]
rs2025622	1.00[ASN][1000 genomes]
rs2025623	1.00[ASN][1000 genomes]
rs2209487	1.00[ASN][1000 genomes]
rs2613103	1.00[ASN][1000 genomes]
rs2798994	1.00[ASN][1000 genomes]
rs2798995	1.00[ASN][1000 genomes]
rs28475171	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2863233	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2863235	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2863236	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28654354	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61861590	1.00[ASN][1000 genomes]
rs7071492	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075076	1.00[ASN][1000 genomes]
rs7075813	1.00[ASN][1000 genomes]
rs7078623	1.00[ASN][1000 genomes]
rs7079939	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086449	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087019	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096797	1.00[ASN][1000 genomes]
rs73267817	1.00[ASN][1000 genomes]
rs74138919	1.00[ASN][1000 genomes]
rs7918642	0.86[MEX][hapmap];0.81[MKK][hapmap];1.00[ASN][1000 genomes]
rs984001	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12266918	FXYD4	cis	parietal	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44306800-44318400	Weak transcription	Fetal Lung	lung
2	chr10:44313000-44318400	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:44314600-44318400	Weak transcription	Primary T cells from cord blood	blood
4	chr10:44314600-44323800	Weak transcription	Thymus	Thymus
5	chr10:44314800-44323200	Weak transcription	Gastric	stomach
6	chr10:44315200-44319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:44315200-44321800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:44316400-44318800	Enhancers	Ovary	ovary
9	chr10:44316400-44321000	Enhancers	Fetal Muscle Leg	muscle
10	chr10:44316400-44321400	Enhancers	Adipose Nuclei	Adipose
11	chr10:44316600-44318600	Enhancers	Right Atrium	heart
12	chr10:44316800-44319600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:44317400-44318400	Weak transcription	Fetal Heart	heart
14	chr10:44317400-44321200	Enhancers	NHDF-Ad	bronchial
15	chr10:44317600-44318600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:44317600-44318800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr10:44317600-44319400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:44317800-44318600	Enhancers	Fetal Stomach	stomach
19	chr10:44317800-44318600	Enhancers	Stomach Smooth Muscle	stomach
20	chr10:44317800-44318800	Enhancers	Colon Smooth Muscle	Colon
21	chr10:44317800-44319000	Enhancers	Stomach Mucosa	stomach
22	chr10:44317800-44319600	Enhancers	Rectal Smooth Muscle	rectum
23	chr10:44317800-44319600	Enhancers	Right Ventricle	heart
24	chr10:44317800-44320800	Enhancers	NHLF	lung
25	chr10:44317800-44320800	Enhancers	Osteobl	bone
26	chr10:44317800-44321400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:44317800-44321400	Enhancers	Left Ventricle	heart
28	chr10:44318000-44318800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr10:44318000-44321200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:44318000-44321400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:44318200-44319000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr10:44318200-44320000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:44318200-44320800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:44318200-44320800	Weak transcription	Aorta	Aorta

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