Variant report

Variant	rs12264669
Chromosome Location	chr10:44317048-44317049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44316802..44318990-chr10:44333723..44335318,2	MCF-7	breast:
2	chr10:44312661..44314867-chr10:44316556..44318099,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11238720	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238721	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238723	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12266918	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254856	1.00[ASN][1000 genomes]
rs1270513	1.00[ASN][1000 genomes]
rs1414491	0.90[AFR][1000 genomes]
rs1578855	1.00[ASN][1000 genomes]
rs17154499	1.00[ASN][1000 genomes]
rs17154520	1.00[ASN][1000 genomes]
rs17154571	1.00[ASN][1000 genomes]
rs1947673	1.00[ASN][1000 genomes]
rs2025622	1.00[ASN][1000 genomes]
rs2025623	1.00[ASN][1000 genomes]
rs2209487	1.00[ASN][1000 genomes]
rs2613103	1.00[ASN][1000 genomes]
rs2798994	1.00[ASN][1000 genomes]
rs2798995	1.00[ASN][1000 genomes]
rs28475171	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2863233	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2863235	0.87[EUR][1000 genomes]
rs2863236	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28654354	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859378	0.83[AFR][1000 genomes]
rs61861590	1.00[ASN][1000 genomes]
rs7071492	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075076	1.00[ASN][1000 genomes]
rs7075813	1.00[ASN][1000 genomes]
rs7078623	1.00[ASN][1000 genomes]
rs7079939	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083186	0.90[AFR][1000 genomes]
rs7086449	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096797	1.00[ASN][1000 genomes]
rs73267817	1.00[ASN][1000 genomes]
rs74138919	1.00[ASN][1000 genomes]
rs7913725	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7918642	1.00[ASN][1000 genomes]
rs984001	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44306800-44318400	Weak transcription	Fetal Lung	lung
2	chr10:44311600-44317800	Weak transcription	Aorta	Aorta
3	chr10:44312400-44317800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:44312800-44317800	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:44312800-44317800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:44312800-44318200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:44313000-44318400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:44313200-44317400	Enhancers	Fetal Heart	heart
9	chr10:44313600-44318200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:44314600-44318400	Weak transcription	Primary T cells from cord blood	blood
11	chr10:44314600-44323800	Weak transcription	Thymus	Thymus
12	chr10:44314800-44323200	Weak transcription	Gastric	stomach
13	chr10:44315200-44319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:44315200-44321800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:44315400-44317800	Weak transcription	Fetal Stomach	stomach
16	chr10:44316000-44317600	Enhancers	Placenta Amnion	Placenta Amnion
17	chr10:44316200-44317400	Enhancers	Right Ventricle	heart
18	chr10:44316400-44317200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:44316400-44318200	Enhancers	Fetal Muscle Trunk	muscle
20	chr10:44316400-44318800	Enhancers	Ovary	ovary
21	chr10:44316400-44321000	Enhancers	Fetal Muscle Leg	muscle
22	chr10:44316400-44321400	Enhancers	Adipose Nuclei	Adipose
23	chr10:44316600-44318000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:44316600-44318600	Enhancers	Right Atrium	heart
25	chr10:44316800-44317800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:44316800-44317800	Weak transcription	Left Ventricle	heart
27	chr10:44316800-44317800	Weak transcription	Osteobl	bone
28	chr10:44316800-44319600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr10:44317000-44317400	Weak transcription	NHDF-Ad	bronchial
30	chr10:44317000-44317800	Weak transcription	NHLF	lung
31	chr10:44317000-44318000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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