Variant report

Variant	rs11238723
Chromosome Location	chr10:44315580-44315581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11238709	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs11238720	0.91[AFR][1000 genomes]
rs11238721	0.91[AFR][1000 genomes]
rs1144486	0.83[AFR][1000 genomes]
rs12264669	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12359707	1.00[CHB][hapmap]
rs1414491	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17154269	1.00[CHB][hapmap]
rs17154436	0.81[ASN][1000 genomes]
rs17154467	0.95[ASN][1000 genomes]
rs2298204	0.84[ASN][1000 genomes]
rs56887761	0.96[ASN][1000 genomes]
rs56942692	0.84[ASN][1000 genomes]
rs57376602	0.98[ASN][1000 genomes]
rs57438040	0.99[ASN][1000 genomes]
rs57645083	0.84[ASN][1000 genomes]
rs57697881	0.98[ASN][1000 genomes]
rs57882812	0.84[ASN][1000 genomes]
rs58009513	0.95[ASN][1000 genomes]
rs58280468	0.89[ASN][1000 genomes]
rs58426522	0.89[ASN][1000 genomes]
rs58526299	0.84[ASN][1000 genomes]
rs58838440	0.84[ASN][1000 genomes]
rs59021054	0.89[ASN][1000 genomes]
rs59084049	0.89[ASN][1000 genomes]
rs59274145	0.84[ASN][1000 genomes]
rs59298548	0.96[ASN][1000 genomes]
rs59658376	0.85[ASN][1000 genomes]
rs59668941	0.84[ASN][1000 genomes]
rs59983288	0.82[ASN][1000 genomes]
rs60207525	0.98[ASN][1000 genomes]
rs60606176	0.84[ASN][1000 genomes]
rs60833858	0.84[ASN][1000 genomes]
rs60927183	0.84[ASN][1000 genomes]
rs61071701	0.95[ASN][1000 genomes]
rs61110542	0.84[ASN][1000 genomes]
rs61525746	0.84[ASN][1000 genomes]
rs61859378	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7071492	0.91[AFR][1000 genomes]
rs7079939	0.91[AFR][1000 genomes]
rs7083186	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7086449	0.94[AFR][1000 genomes]
rs7087019	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs713496	0.84[ASN][1000 genomes]
rs73275973	0.82[ASN][1000 genomes]
rs73275981	0.84[ASN][1000 genomes]
rs73275989	0.84[ASN][1000 genomes]
rs73275990	0.84[ASN][1000 genomes]
rs73275995	0.84[ASN][1000 genomes]
rs7913725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44306800-44318400	Weak transcription	Fetal Lung	lung
2	chr10:44311600-44317800	Weak transcription	Aorta	Aorta
3	chr10:44312400-44317800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:44312600-44316400	Weak transcription	Adipose Nuclei	Adipose
5	chr10:44312600-44316400	Weak transcription	Ovary	ovary
6	chr10:44312800-44315600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:44312800-44316400	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:44312800-44317800	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:44312800-44317800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:44312800-44318200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:44313000-44318400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:44313200-44317400	Enhancers	Fetal Heart	heart
13	chr10:44313400-44315600	Weak transcription	Osteobl	bone
14	chr10:44313400-44316200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:44313400-44316200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:44313400-44316200	Weak transcription	NHDF-Ad	bronchial
17	chr10:44313400-44316200	Weak transcription	NHLF	lung
18	chr10:44313400-44316400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:44313400-44316600	Weak transcription	Right Atrium	heart
20	chr10:44313400-44316800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:44313600-44318200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:44313800-44316600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:44314000-44315600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr10:44314000-44316400	Weak transcription	Left Ventricle	heart
25	chr10:44314600-44318400	Weak transcription	Primary T cells from cord blood	blood
26	chr10:44314600-44323800	Weak transcription	Thymus	Thymus
27	chr10:44314800-44323200	Weak transcription	Gastric	stomach
28	chr10:44315000-44315600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:44315200-44316200	Weak transcription	Right Ventricle	heart
30	chr10:44315200-44319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:44315200-44321800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:44315400-44316400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:44315400-44317800	Weak transcription	Fetal Stomach	stomach

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