Variant report

Variant	rs58426522
Chromosome Location	chr10:44339911-44339912
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11238723	0.89[ASN][1000 genomes]
rs12778871	1.00[AMR][1000 genomes]
rs1414491	0.85[ASN][1000 genomes]
rs17154467	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2298204	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56887761	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56942692	0.94[ASN][1000 genomes]
rs57376602	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57438040	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57645083	0.94[ASN][1000 genomes]
rs57697881	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57882812	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58009513	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58280468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58526299	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58838440	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59021054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59084049	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59274145	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59298548	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59658376	0.93[ASN][1000 genomes]
rs59668941	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59834212	0.92[EUR][1000 genomes]
rs59983288	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60207525	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60606176	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60833858	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60927183	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61071701	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61110542	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61525746	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61859378	0.95[ASN][1000 genomes]
rs7083186	0.85[ASN][1000 genomes]
rs713496	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73275973	0.93[ASN][1000 genomes]
rs73275981	0.94[ASN][1000 genomes]
rs73275989	0.94[ASN][1000 genomes]
rs73275990	0.94[ASN][1000 genomes]
rs73275995	0.94[ASN][1000 genomes]
rs7913725	0.88[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44337400-44342400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:44338200-44340200	Enhancers	Adipose Nuclei	Adipose
3	chr10:44338200-44340600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44338200-44341200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:44338200-44341800	Enhancers	Osteobl	bone
6	chr10:44338200-44342200	Enhancers	Left Ventricle	heart
7	chr10:44338200-44342800	Enhancers	NHLF	lung
8	chr10:44338400-44340200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:44338400-44342800	Enhancers	Fetal Muscle Leg	muscle
10	chr10:44338600-44340200	Enhancers	HSMM	muscle
11	chr10:44338600-44340600	Weak transcription	Gastric	stomach
12	chr10:44338600-44341000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:44338800-44340400	Weak transcription	Stomach Mucosa	stomach
14	chr10:44338800-44340600	Weak transcription	Right Atrium	heart
15	chr10:44338800-44342200	Enhancers	HSMMtube	muscle
16	chr10:44339000-44340000	Enhancers	Fetal Stomach	stomach
17	chr10:44339000-44340600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:44339200-44340000	Weak transcription	Aorta	Aorta
19	chr10:44339200-44340600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:44339200-44340600	Weak transcription	Ovary	ovary
21	chr10:44339200-44340600	Weak transcription	Spleen	Spleen
22	chr10:44339200-44340800	Enhancers	Fetal Heart	heart
23	chr10:44339200-44341800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:44339200-44341800	Weak transcription	Colonic Mucosa	Colon
25	chr10:44339200-44342800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:44339200-44349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:44339400-44340000	Enhancers	Psoas Muscle	Psoas
28	chr10:44339400-44340600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:44339400-44341400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:44339400-44341600	Weak transcription	Fetal Lung	lung
31	chr10:44339400-44342800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:44339400-44342800	Enhancers	NHDF-Ad	bronchial
33	chr10:44339600-44340600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:44339800-44340000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr10:44339800-44341000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:44339800-44341200	Enhancers	Esophagus	oesophagus
37	chr10:44339800-44342200	Enhancers	Lung	lung
38	chr10:44339800-44342400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links