Variant report

Variant	rs58009513
Chromosome Location	chr10:44312195-44312196
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11238723	0.95[ASN][1000 genomes]
rs12778871	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1414491	0.99[ASN][1000 genomes]
rs17154436	0.86[ASN][1000 genomes]
rs17154467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298204	0.81[ASN][1000 genomes]
rs56887761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56942692	0.81[ASN][1000 genomes]
rs57376602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57438040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57645083	0.81[ASN][1000 genomes]
rs57697881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57882812	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58280468	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58426522	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58526299	0.81[ASN][1000 genomes]
rs58838440	0.81[ASN][1000 genomes]
rs59021054	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59084049	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59274145	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59298548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59668941	0.81[ASN][1000 genomes]
rs60207525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60606176	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60833858	0.81[ASN][1000 genomes]
rs60927183	0.81[ASN][1000 genomes]
rs61071701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61110542	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61525746	0.81[ASN][1000 genomes]
rs61859378	0.89[ASN][1000 genomes]
rs7083186	0.99[ASN][1000 genomes]
rs713496	0.81[ASN][1000 genomes]
rs73275981	0.81[ASN][1000 genomes]
rs73275989	0.81[ASN][1000 genomes]
rs73275990	0.81[ASN][1000 genomes]
rs73275995	0.81[ASN][1000 genomes]
rs7913725	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44305200-44312200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:44306800-44318400	Weak transcription	Fetal Lung	lung
3	chr10:44309400-44313400	Enhancers	NHDF-Ad	bronchial
4	chr10:44309600-44313400	Enhancers	NHLF	lung
5	chr10:44309800-44312800	Enhancers	NH-A	brain
6	chr10:44309800-44314800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr10:44310000-44313400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:44310200-44313400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:44310400-44312200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:44310400-44313000	Enhancers	Fetal Thymus	thymus
11	chr10:44310400-44313400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr10:44310600-44313000	Enhancers	Primary hematopoietic stem cells	blood
13	chr10:44310600-44313000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr10:44310600-44313400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr10:44310800-44312600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr10:44310800-44313400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr10:44311000-44313000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:44311000-44313400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:44311000-44314000	Enhancers	Left Ventricle	heart
20	chr10:44311000-44314600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr10:44311000-44314600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:44311200-44312200	Flanking Active TSS	Primary T cells from cord blood	blood
23	chr10:44311200-44312200	Enhancers	Liver	Liver
24	chr10:44311200-44312800	Enhancers	Fetal Muscle Leg	muscle
25	chr10:44311200-44313200	Enhancers	Placenta Amnion	Placenta Amnion
26	chr10:44311200-44313800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:44311400-44312200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr10:44311400-44312200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:44311400-44312400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:44311400-44312400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr10:44311400-44312600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:44311600-44312400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:44311600-44312400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr10:44311600-44312400	Flanking Active TSS	GM12878-XiMat	blood
35	chr10:44311600-44312600	Enhancers	Adipose Nuclei	Adipose
36	chr10:44311600-44312800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:44311600-44317800	Weak transcription	Aorta	Aorta
38	chr10:44311800-44312200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:44311800-44312200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:44311800-44312400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:44311800-44312400	Enhancers	Rectal Smooth Muscle	rectum
42	chr10:44311800-44312600	Enhancers	Primary B cells from peripheral blood	blood
43	chr10:44311800-44312800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:44311800-44312800	Enhancers	Colon Smooth Muscle	Colon
45	chr10:44311800-44312800	Enhancers	Fetal Stomach	stomach
46	chr10:44311800-44312800	Enhancers	Thymus	Thymus
47	chr10:44311800-44313200	Flanking Active TSS	Fetal Heart	heart
48	chr10:44311800-44313400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:44311800-44313400	Enhancers	Placenta	Placenta
50	chr10:44311800-44313400	Enhancers	Right Atrium	heart

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