Variant report

Variant	rs61110542
Chromosome Location	chr10:44346863-44346864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44345365..44347764-chr10:44350017..44351767,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11238723	0.84[ASN][1000 genomes]
rs12778871	1.00[AMR][1000 genomes]
rs17154467	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2298204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56887761	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56942692	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57279559	1.00[AFR][1000 genomes]
rs57376602	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57438040	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57645083	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57697881	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57882812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58009513	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58280468	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58426522	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58526299	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58838440	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59021054	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59084049	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59274145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59298548	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59658376	0.99[ASN][1000 genomes]
rs59668941	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59834212	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59983288	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60207525	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60606176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60833858	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60927183	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61071701	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61525746	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859378	0.89[ASN][1000 genomes]
rs713496	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275973	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73275981	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275989	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275990	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275995	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275997	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73275998	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74138916	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7913725	0.83[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44339200-44349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:44340800-44357600	Weak transcription	Aorta	Aorta
3	chr10:44341200-44347600	Weak transcription	Gastric	stomach
4	chr10:44342200-44347400	Weak transcription	Fetal Heart	heart
5	chr10:44342200-44347400	Weak transcription	HSMMtube	muscle
6	chr10:44342200-44350200	Weak transcription	Right Atrium	heart
7	chr10:44342400-44349200	Weak transcription	HSMM	muscle
8	chr10:44342800-44347000	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:44342800-44349000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:44342800-44349200	Weak transcription	NHLF	lung
11	chr10:44343000-44352400	Weak transcription	HUVEC	blood vessel
12	chr10:44343600-44349600	Weak transcription	Left Ventricle	heart
13	chr10:44346200-44347000	Enhancers	Stomach Mucosa	stomach
14	chr10:44346600-44350800	Enhancers	Placenta	Placenta
15	chr10:44346600-44353000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links