Variant report

Variant	rs57882812
Chromosome Location	chr10:44351049-44351050
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr10:44350729-44351760	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44345365..44347764-chr10:44350017..44351767,2	K562	blood:
2	chr10:44350570..44352669-chr10:44352743..44355459,2	K562	blood:

Variant related genes	Relation type
LINC00840	TF binding region
ENSG00000226808	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11238723	0.84[ASN][1000 genomes]
rs12778871	1.00[AMR][1000 genomes]
rs17154467	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2298204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56887761	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56942692	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57279559	1.00[AFR][1000 genomes]
rs57376602	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57438040	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57645083	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57697881	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58009513	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58280468	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58426522	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58526299	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58838440	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59021054	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59084049	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59274145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59298548	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59658376	0.99[ASN][1000 genomes]
rs59668941	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59834212	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59983288	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60207525	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60606176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60833858	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60927183	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61071701	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61110542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61525746	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859378	0.89[ASN][1000 genomes]
rs713496	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275973	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73275981	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275989	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275990	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275995	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275997	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73275998	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74138916	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7913725	0.83[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44340800-44357600	Weak transcription	Aorta	Aorta
2	chr10:44343000-44352400	Weak transcription	HUVEC	blood vessel
3	chr10:44346600-44353000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:44347200-44351800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr10:44348400-44352600	Weak transcription	Fetal Brain Female	brain
6	chr10:44348600-44351200	Weak transcription	Pancreas	Pancrea
7	chr10:44348600-44352600	Weak transcription	Fetal Brain Male	brain
8	chr10:44349200-44352000	Enhancers	Fetal Heart	heart
9	chr10:44349600-44352600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:44349600-44353000	Enhancers	Left Ventricle	heart
11	chr10:44349800-44351200	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:44349800-44351400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:44349800-44352600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:44350000-44351200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:44350000-44352000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:44350000-44352400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:44350000-44352600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:44350000-44352600	Weak transcription	NHLF	lung
19	chr10:44350000-44352600	Weak transcription	Osteobl	bone
20	chr10:44350200-44351200	Weak transcription	Adipose Nuclei	Adipose
21	chr10:44350200-44351400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:44350200-44352600	Weak transcription	HSMM	muscle
23	chr10:44350200-44352600	Weak transcription	HSMMtube	muscle
24	chr10:44350400-44351200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:44350400-44352600	Weak transcription	Hela-S3	cervix
26	chr10:44350800-44351600	Enhancers	Right Atrium	heart
27	chr10:44350800-44351800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:44350800-44352000	Enhancers	Right Ventricle	heart
29	chr10:44351000-44352600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr10:44351000-44354800	Enhancers	NHDF-Ad	bronchial
31	chr10:44351000-44357800	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links