Variant report

Variant	rs59983288
Chromosome Location	chr10:44357126-44357127
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44355270..44357315-chr10:44376908..44378969,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11238723	0.82[ASN][1000 genomes]
rs12778871	0.81[AMR][1000 genomes]
rs2298204	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56942692	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57376602	0.84[ASN][1000 genomes]
rs57438040	0.83[ASN][1000 genomes]
rs57645083	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57697881	0.84[ASN][1000 genomes]
rs57882812	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58280468	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58426522	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58526299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58838440	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59021054	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59084049	0.92[ASN][1000 genomes]
rs59274145	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59298548	0.82[ASN][1000 genomes]
rs59658376	0.97[ASN][1000 genomes]
rs59668941	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59834212	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60207525	0.84[ASN][1000 genomes]
rs60606176	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60833858	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60927183	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61110542	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61525746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61859378	0.87[ASN][1000 genomes]
rs713496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73275973	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73275981	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73275989	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73275990	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73275995	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73275997	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73275998	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74138916	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7894713	0.84[AFR][1000 genomes]
rs7913725	0.81[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44340800-44357600	Weak transcription	Aorta	Aorta
2	chr10:44351000-44357800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:44351400-44358000	Weak transcription	Adipose Nuclei	Adipose
4	chr10:44352000-44359200	Weak transcription	Fetal Heart	heart
5	chr10:44352800-44357400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:44352800-44357400	Weak transcription	Hela-S3	cervix
7	chr10:44353000-44359600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:44353200-44358200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:44353400-44357400	Weak transcription	Stomach Mucosa	stomach
10	chr10:44353400-44358400	Weak transcription	Fetal Stomach	stomach
11	chr10:44353400-44358400	Weak transcription	Gastric	stomach
12	chr10:44353400-44358800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:44353400-44358800	Weak transcription	Pancreas	Pancrea
14	chr10:44353600-44359600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:44353800-44357400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:44354000-44357600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:44354200-44357200	Weak transcription	Osteobl	bone
18	chr10:44354400-44357200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:44354600-44357200	Weak transcription	NHLF	lung
20	chr10:44355000-44357200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:44355200-44357800	Weak transcription	Left Ventricle	heart
22	chr10:44355200-44357800	Weak transcription	Lung	lung
23	chr10:44355200-44357800	Weak transcription	Right Atrium	heart
24	chr10:44355800-44357800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:44356800-44361200	Enhancers	NHDF-Ad	bronchial
26	chr10:44357000-44358000	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr10:44357000-44361000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr10:44357000-44361000	Enhancers	HUVEC	blood vessel

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