Variant report

Variant	rs58280468
Chromosome Location	chr10:44342733-44342734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44340953..44343939-chr10:44348201..44350447,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11238723	0.89[ASN][1000 genomes]
rs12778871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1414491	0.85[ASN][1000 genomes]
rs17154467	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2298204	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56887761	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56942692	0.94[ASN][1000 genomes]
rs57376602	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57438040	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57645083	0.94[ASN][1000 genomes]
rs57697881	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57882812	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58009513	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58426522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58526299	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58838440	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59021054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59084049	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59274145	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59298548	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59658376	0.93[ASN][1000 genomes]
rs59668941	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59834212	0.92[EUR][1000 genomes]
rs59983288	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60207525	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60606176	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60833858	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60927183	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61071701	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61110542	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61525746	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61859378	0.95[ASN][1000 genomes]
rs7083186	0.85[ASN][1000 genomes]
rs713496	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73275973	0.93[ASN][1000 genomes]
rs73275981	0.94[ASN][1000 genomes]
rs73275989	0.94[ASN][1000 genomes]
rs73275990	0.94[ASN][1000 genomes]
rs73275995	0.94[ASN][1000 genomes]
rs7913725	0.88[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44338200-44342800	Enhancers	NHLF	lung
2	chr10:44338400-44342800	Enhancers	Fetal Muscle Leg	muscle
3	chr10:44339200-44342800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:44339200-44349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:44339400-44342800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:44339400-44342800	Enhancers	NHDF-Ad	bronchial
7	chr10:44340600-44343400	Enhancers	Ovary	ovary
8	chr10:44340800-44357600	Weak transcription	Aorta	Aorta
9	chr10:44341000-44346600	Weak transcription	Placenta	Placenta
10	chr10:44341200-44346200	Weak transcription	Stomach Mucosa	stomach
11	chr10:44341200-44347600	Weak transcription	Gastric	stomach
12	chr10:44341600-44342800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:44341600-44342800	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr10:44341600-44342800	Enhancers	Fetal Lung	lung
15	chr10:44341600-44342800	Enhancers	Fetal Thymus	thymus
16	chr10:44341800-44342800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:44342200-44342800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:44342200-44342800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr10:44342200-44342800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:44342200-44342800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:44342200-44342800	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr10:44342200-44342800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr10:44342200-44342800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:44342200-44342800	Enhancers	Thymus	Thymus
25	chr10:44342200-44343000	Enhancers	HUVEC	blood vessel
26	chr10:44342200-44343200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr10:44342200-44343200	Weak transcription	Esophagus	oesophagus
28	chr10:44342200-44343200	Weak transcription	Left Ventricle	heart
29	chr10:44342200-44343200	Enhancers	Osteobl	bone
30	chr10:44342200-44343400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:44342200-44343400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:44342200-44343400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:44342200-44343400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr10:44342200-44343800	Enhancers	Primary T cells from cord blood	blood
35	chr10:44342200-44347400	Weak transcription	Fetal Heart	heart
36	chr10:44342200-44347400	Weak transcription	HSMMtube	muscle
37	chr10:44342200-44350200	Weak transcription	Right Atrium	heart
38	chr10:44342400-44342800	Enhancers	Dnd41	blood
39	chr10:44342400-44343200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:44342400-44349200	Weak transcription	HSMM	muscle

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