Variant report

Variant	rs7083186
Chromosome Location	chr10:44311824-44311825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11238720	0.91[AFR][1000 genomes]
rs11238721	0.91[AFR][1000 genomes]
rs11238723	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1144486	0.83[AFR][1000 genomes]
rs12264669	0.90[AFR][1000 genomes]
rs12357048	0.81[ASN][1000 genomes]
rs12360144	0.81[ASN][1000 genomes]
rs1414491	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154436	0.85[ASN][1000 genomes]
rs17154467	0.99[ASN][1000 genomes]
rs1886723	0.81[ASN][1000 genomes]
rs55874105	0.81[ASN][1000 genomes]
rs56887761	0.98[ASN][1000 genomes]
rs57376602	0.94[ASN][1000 genomes]
rs57438040	0.95[ASN][1000 genomes]
rs57697881	0.94[ASN][1000 genomes]
rs58009513	0.99[ASN][1000 genomes]
rs58280468	0.85[ASN][1000 genomes]
rs58426522	0.85[ASN][1000 genomes]
rs59021054	0.85[ASN][1000 genomes]
rs59084049	0.85[ASN][1000 genomes]
rs59298548	0.91[ASN][1000 genomes]
rs59658376	0.81[ASN][1000 genomes]
rs60207525	0.94[ASN][1000 genomes]
rs61071701	0.99[ASN][1000 genomes]
rs61859378	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7071492	0.91[AFR][1000 genomes]
rs7079939	0.91[AFR][1000 genomes]
rs7086449	0.90[AFR][1000 genomes]
rs7087019	0.89[AFR][1000 genomes]
rs7913725	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44305200-44312000	Weak transcription	Ovary	ovary
2	chr10:44305200-44312200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:44306800-44318400	Weak transcription	Fetal Lung	lung
4	chr10:44309400-44313400	Enhancers	NHDF-Ad	bronchial
5	chr10:44309600-44313400	Enhancers	NHLF	lung
6	chr10:44309800-44312000	Enhancers	Osteobl	bone
7	chr10:44309800-44312800	Enhancers	NH-A	brain
8	chr10:44309800-44314800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr10:44310000-44313400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:44310200-44313400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:44310400-44312200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:44310400-44313000	Enhancers	Fetal Thymus	thymus
13	chr10:44310400-44313400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr10:44310600-44313000	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:44310600-44313000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr10:44310600-44313400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr10:44310800-44312600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr10:44310800-44313400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:44311000-44312000	Enhancers	Psoas Muscle	Psoas
20	chr10:44311000-44313000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:44311000-44313400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:44311000-44314000	Enhancers	Left Ventricle	heart
23	chr10:44311000-44314600	Enhancers	Primary T cells fromperipheralblood	blood
24	chr10:44311000-44314600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:44311200-44312200	Flanking Active TSS	Primary T cells from cord blood	blood
26	chr10:44311200-44312200	Enhancers	Liver	Liver
27	chr10:44311200-44312800	Enhancers	Fetal Muscle Leg	muscle
28	chr10:44311200-44313200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr10:44311200-44313800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:44311400-44312000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:44311400-44312000	Enhancers	Stomach Smooth Muscle	stomach
32	chr10:44311400-44312200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr10:44311400-44312200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:44311400-44312400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr10:44311400-44312400	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr10:44311400-44312600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:44311600-44312400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:44311600-44312400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr10:44311600-44312400	Flanking Active TSS	GM12878-XiMat	blood
40	chr10:44311600-44312600	Enhancers	Adipose Nuclei	Adipose
41	chr10:44311600-44312800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:44311600-44317800	Weak transcription	Aorta	Aorta
43	chr10:44311800-44312000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:44311800-44312000	Enhancers	Dnd41	blood
45	chr10:44311800-44312200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:44311800-44312200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:44311800-44312400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:44311800-44312400	Enhancers	Rectal Smooth Muscle	rectum
49	chr10:44311800-44312600	Enhancers	Primary B cells from peripheral blood	blood
50	chr10:44311800-44312800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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