Variant report

Variant	rs17154436
Chromosome Location	chr10:44302830-44302831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44298175..44301035-chr10:44302749..44304944,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11238709	1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs11238710	0.87[ASN][1000 genomes]
rs11238723	0.81[ASN][1000 genomes]
rs12356661	0.87[ASN][1000 genomes]
rs12357048	0.89[ASN][1000 genomes]
rs12359707	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs12360144	0.89[ASN][1000 genomes]
rs1414491	0.85[ASN][1000 genomes]
rs17154269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17154388	0.85[ASN][1000 genomes]
rs17154467	0.86[ASN][1000 genomes]
rs1886723	0.89[ASN][1000 genomes]
rs2902564	0.87[ASN][1000 genomes]
rs55874105	0.89[ASN][1000 genomes]
rs56800667	0.82[ASN][1000 genomes]
rs56887761	0.85[ASN][1000 genomes]
rs57376602	0.81[ASN][1000 genomes]
rs57438040	0.82[ASN][1000 genomes]
rs57697881	0.81[ASN][1000 genomes]
rs57720202	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58009513	0.86[ASN][1000 genomes]
rs58977619	0.85[ASN][1000 genomes]
rs59003973	0.84[ASN][1000 genomes]
rs59069351	0.84[ASN][1000 genomes]
rs59579985	0.80[ASN][1000 genomes]
rs60207525	0.81[ASN][1000 genomes]
rs61071701	0.86[ASN][1000 genomes]
rs61528945	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61861582	0.86[ASN][1000 genomes]
rs61861583	0.87[ASN][1000 genomes]
rs7083186	0.85[ASN][1000 genomes]
rs7913725	0.82[ASN][1000 genomes]
rs871834	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44290000-44303200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:44292600-44304800	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:44293400-44304600	Weak transcription	Ovary	ovary
4	chr10:44295000-44311000	Weak transcription	Left Ventricle	heart
5	chr10:44299600-44303000	Weak transcription	Fetal Thymus	thymus
6	chr10:44300400-44304800	Weak transcription	Fetal Kidney	kidney
7	chr10:44300600-44307400	Enhancers	Osteobl	bone
8	chr10:44300800-44306000	Weak transcription	Fetal Lung	lung
9	chr10:44301000-44304800	Weak transcription	Adipose Nuclei	Adipose
10	chr10:44301400-44303600	Enhancers	Fetal Muscle Trunk	muscle
11	chr10:44301400-44304200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr10:44301400-44304200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:44301400-44307200	Enhancers	Primary T cells from cord blood	blood
14	chr10:44301600-44303200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:44301600-44303400	Weak transcription	NHDF-Ad	bronchial
16	chr10:44301600-44304600	Weak transcription	Right Atrium	heart
17	chr10:44301800-44303000	Weak transcription	Spleen	Spleen
18	chr10:44302400-44304200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:44302400-44304200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr10:44302600-44303000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:44302600-44304200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr10:44302600-44304200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr10:44302600-44304200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:44302600-44304200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:44302600-44304200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr10:44302600-44304200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr10:44302600-44304200	Enhancers	Aorta	Aorta
28	chr10:44302600-44305400	Enhancers	NH-A	brain
29	chr10:44302600-44305600	Enhancers	Dnd41	blood
30	chr10:44302800-44303200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:44302800-44303600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:44302800-44303600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:44302800-44304200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr10:44302800-44304200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:44302800-44304200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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