Variant report

Variant	rs58977619
Chromosome Location	chr10:44284247-44284248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF32-7	chr10:44282860-44285865	NR_002726

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11238709	0.97[ASN][1000 genomes]
rs11238710	0.97[ASN][1000 genomes]
rs12356661	0.97[ASN][1000 genomes]
rs12357048	0.92[ASN][1000 genomes]
rs12359707	0.97[ASN][1000 genomes]
rs12360144	0.92[ASN][1000 genomes]
rs17154237	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17154294	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17154300	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17154313	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17154318	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17154325	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17154388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154436	0.85[ASN][1000 genomes]
rs1886723	0.92[ASN][1000 genomes]
rs2902564	0.97[ASN][1000 genomes]
rs35542796	0.86[EUR][1000 genomes]
rs4146639	0.93[EUR][1000 genomes]
rs55874105	0.92[ASN][1000 genomes]
rs56800667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56935737	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57430423	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57720202	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59003973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59069351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59235630	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59579985	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59968020	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61528945	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61861582	0.95[ASN][1000 genomes]
rs61861583	0.97[ASN][1000 genomes]
rs7084833	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73268420	0.80[ASN][1000 genomes]
rs73268460	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73268466	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs871834	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947899	chr10:44283049-44286085	Enhancers Weak transcription	TF binding region CpG island lncRNA miRNA target site	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44277800-44295000	Weak transcription	Spleen	Spleen
2	chr10:44281600-44289600	Weak transcription	Right Atrium	heart

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