Variant report

Variant	rs4146639
Chromosome Location	chr10:44206462-44206463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10508870	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10508871	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10508872	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11238641	0.97[ASN][1000 genomes]
rs11238646	0.99[ASN][1000 genomes]
rs11238709	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12359707	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs17154164	0.97[ASN][1000 genomes]
rs17154173	0.97[ASN][1000 genomes]
rs17154178	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17154182	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17154237	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17154269	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs17154294	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17154300	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17154313	0.93[EUR][1000 genomes]
rs17154318	0.93[EUR][1000 genomes]
rs17154325	0.93[EUR][1000 genomes]
rs17154388	0.93[EUR][1000 genomes]
rs35542796	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56800667	0.93[EUR][1000 genomes]
rs56935737	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57137545	0.97[ASN][1000 genomes]
rs57430423	0.93[EUR][1000 genomes]
rs57517635	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57720202	0.83[EUR][1000 genomes]
rs58197647	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58967637	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58977619	0.93[EUR][1000 genomes]
rs59003973	0.93[EUR][1000 genomes]
rs59069351	0.93[EUR][1000 genomes]
rs59124816	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59228864	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59235630	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59238114	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59303606	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59579985	0.93[EUR][1000 genomes]
rs59968020	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60580954	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60799950	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61185278	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61405658	0.97[ASN][1000 genomes]
rs61528945	0.83[EUR][1000 genomes]
rs7084833	0.93[EUR][1000 genomes]
rs73266552	0.97[ASN][1000 genomes]
rs73266553	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73266556	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73266557	0.97[ASN][1000 genomes]
rs73266574	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73268420	0.88[ASN][1000 genomes]
rs73268460	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73268466	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7899244	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs871834	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3317585	chr10:44202846-44207644	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3521366	chr10:44203996-44206694	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3521368	chr10:44203996-44206694	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44203400-44207200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44204200-44207000	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links