Variant report

Variant	rs11238646
Chromosome Location	chr10:44207375-44207376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10508870	0.95[ASN][1000 genomes]
rs10508871	0.95[ASN][1000 genomes]
rs10508872	0.95[ASN][1000 genomes]
rs10899881	0.81[CEU][hapmap]
rs11238641	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238645	0.80[AMR][1000 genomes]
rs11238647	0.80[AMR][1000 genomes]
rs11238673	0.88[CEU][hapmap]
rs11238709	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11591525	0.83[CEU][hapmap]
rs12359707	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17154164	0.95[ASN][1000 genomes]
rs17154173	0.95[ASN][1000 genomes]
rs17154178	0.95[ASN][1000 genomes]
rs17154182	0.95[ASN][1000 genomes]
rs17154237	0.86[ASN][1000 genomes]
rs17154269	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17154294	0.83[ASN][1000 genomes]
rs17154300	0.83[ASN][1000 genomes]
rs35542796	0.95[ASN][1000 genomes]
rs4146639	0.99[ASN][1000 genomes]
rs56935737	0.86[ASN][1000 genomes]
rs57137545	0.95[ASN][1000 genomes]
rs57517635	0.95[ASN][1000 genomes]
rs58197647	0.95[ASN][1000 genomes]
rs58967637	0.95[ASN][1000 genomes]
rs59124816	0.95[ASN][1000 genomes]
rs59228864	0.95[ASN][1000 genomes]
rs59235630	0.86[ASN][1000 genomes]
rs59238114	0.95[ASN][1000 genomes]
rs59303606	0.95[ASN][1000 genomes]
rs59968020	0.86[ASN][1000 genomes]
rs60580954	0.95[ASN][1000 genomes]
rs60799950	0.95[ASN][1000 genomes]
rs61185278	0.95[ASN][1000 genomes]
rs61405658	0.95[ASN][1000 genomes]
rs73266552	0.95[ASN][1000 genomes]
rs73266553	0.95[ASN][1000 genomes]
rs73266556	0.94[ASN][1000 genomes]
rs73266557	0.95[ASN][1000 genomes]
rs73266574	0.95[ASN][1000 genomes]
rs73268420	0.86[ASN][1000 genomes]
rs73268460	0.82[ASN][1000 genomes]
rs73268466	0.83[ASN][1000 genomes]
rs7899244	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3317585	chr10:44202846-44207644	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11238646	RASSF4	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44207000-44207800	Enhancers	Spleen	Spleen
2	chr10:44207200-44207400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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