Variant report
Variant | rs11591525 |
---|---|
Chromosome Location | chr10:44224012-44224013 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | HMGN3 | chr10:44223854-44224033 | K562 | blood: | n/a | n/a |
2 | CTCF | chr10:44223880-44224030 | SK-N-SH_RA | brain: | n/a | chr10:44223966-44223979 |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:44222418..44225154-chr10:44227350..44232031,4 | K562 | blood: |
(count:1 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-ZNF485-7 | chr10:44223665-44224176 | NONHSAT012989 |
No data |
No data |
Variant related genes | Relation type |
---|---|
UQCRHP3 | TF binding region |
ENSG00000224162 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10899858 | 1.00[ASN][1000 genomes] |
rs10899859 | 1.00[ASN][1000 genomes] |
rs10899881 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10899885 | 1.00[ASN][1000 genomes] |
rs11238591 | 1.00[ASN][1000 genomes] |
rs11238605 | 1.00[ASN][1000 genomes] |
rs11238628 | 1.00[ASN][1000 genomes] |
rs11238635 | 1.00[ASN][1000 genomes] |
rs11238638 | 1.00[ASN][1000 genomes] |
rs11238645 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11238647 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11238673 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11238674 | 1.00[ASN][1000 genomes] |
rs11238675 | 1.00[ASN][1000 genomes] |
rs11238677 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11238678 | 1.00[ASN][1000 genomes] |
rs11238679 | 1.00[ASN][1000 genomes] |
rs11238689 | 1.00[ASN][1000 genomes] |
rs11238695 | 1.00[ASN][1000 genomes] |
rs11238704 | 1.00[ASN][1000 genomes] |
rs11238711 | 1.00[ASN][1000 genomes] |
rs11592645 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11598020 | 1.00[ASN][1000 genomes] |
rs12263722 | 1.00[ASN][1000 genomes] |
rs12358200 | 1.00[ASN][1000 genomes] |
rs1537799 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs17154006 | 1.00[ASN][1000 genomes] |
rs17154012 | 1.00[ASN][1000 genomes] |
rs17154020 | 1.00[ASN][1000 genomes] |
rs17447133 | 1.00[ASN][1000 genomes] |
rs17447468 | 1.00[ASN][1000 genomes] |
rs17447580 | 1.00[ASN][1000 genomes] |
rs17463850 | 1.00[ASN][1000 genomes] |
rs2005094 | 1.00[ASN][1000 genomes] |
rs34966945 | 1.00[ASN][1000 genomes] |
rs41313824 | 1.00[ASN][1000 genomes] |
rs57740712 | 1.00[ASN][1000 genomes] |
rs59220072 | 1.00[ASN][1000 genomes] |
rs61859177 | 1.00[ASN][1000 genomes] |
rs61859178 | 1.00[ASN][1000 genomes] |
rs61859179 | 1.00[ASN][1000 genomes] |
rs61859180 | 1.00[ASN][1000 genomes] |
rs61859181 | 1.00[ASN][1000 genomes] |
rs61859182 | 1.00[ASN][1000 genomes] |
rs61859185 | 1.00[ASN][1000 genomes] |
rs61859203 | 1.00[ASN][1000 genomes] |
rs61859204 | 1.00[ASN][1000 genomes] |
rs61859207 | 1.00[ASN][1000 genomes] |
rs61859221 | 1.00[ASN][1000 genomes] |
rs61859388 | 1.00[ASN][1000 genomes] |
rs61859402 | 1.00[ASN][1000 genomes] |
rs61861561 | 1.00[ASN][1000 genomes] |
rs61861563 | 1.00[ASN][1000 genomes] |
rs61861566 | 1.00[ASN][1000 genomes] |
rs61861567 | 1.00[ASN][1000 genomes] |
rs61861585 | 1.00[ASN][1000 genomes] |
rs7903467 | 1.00[ASN][1000 genomes] |
rs7903833 | 1.00[ASN][1000 genomes] |
rs7906484 | 1.00[ASN][1000 genomes] |
rs7913352 | 1.00[ASN][1000 genomes] |
rs7916345 | 1.00[ASN][1000 genomes] |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:44223600-44224200 | Bivalent Enhancer | Placenta | Placenta |