Variant report
| Variant | rs61859178 |
|---|---|
| Chromosome Location | chr10:44097957-44097958 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:44090591..44094323-chr10:44095437..44099024,4 | K562 | blood: | |
| 2 | chr10:44068669..44071698-chr10:44096672..44099575,3 | K562 | blood: | |
| 3 | chr10:44075835..44077526-chr10:44095693..44098243,2 | K562 | blood: | |
| 4 | chr10:44097620..44100103-chr10:44100375..44102057,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000196793 | Chromatin interaction |
| ENSG00000198298 | Chromatin interaction |
| ENSG00000232004 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:75)
| rs_ID | r2[population] |
|---|---|
| rs10899858 | 1.00[ASN][1000 genomes] |
| rs10899859 | 1.00[ASN][1000 genomes] |
| rs10899881 | 1.00[ASN][1000 genomes] |
| rs10899885 | 1.00[ASN][1000 genomes] |
| rs11238547 | 1.00[ASN][1000 genomes] |
| rs11238570 | 1.00[ASN][1000 genomes] |
| rs11238591 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11238605 | 1.00[ASN][1000 genomes] |
| rs11238628 | 1.00[ASN][1000 genomes] |
| rs11238635 | 1.00[ASN][1000 genomes] |
| rs11238638 | 1.00[ASN][1000 genomes] |
| rs11238645 | 1.00[ASN][1000 genomes] |
| rs11238647 | 1.00[ASN][1000 genomes] |
| rs11238673 | 1.00[ASN][1000 genomes] |
| rs11238674 | 1.00[ASN][1000 genomes] |
| rs11238675 | 1.00[ASN][1000 genomes] |
| rs11238677 | 1.00[ASN][1000 genomes] |
| rs11238678 | 1.00[ASN][1000 genomes] |
| rs11238679 | 1.00[ASN][1000 genomes] |
| rs11238689 | 1.00[ASN][1000 genomes] |
| rs11238695 | 1.00[ASN][1000 genomes] |
| rs11238704 | 1.00[ASN][1000 genomes] |
| rs11591525 | 1.00[ASN][1000 genomes] |
| rs11592645 | 1.00[ASN][1000 genomes] |
| rs11598020 | 1.00[ASN][1000 genomes] |
| rs12263722 | 1.00[ASN][1000 genomes] |
| rs12356024 | 1.00[ASN][1000 genomes] |
| rs12356570 | 1.00[ASN][1000 genomes] |
| rs12358200 | 1.00[ASN][1000 genomes] |
| rs12359520 | 1.00[ASN][1000 genomes] |
| rs12359825 | 1.00[ASN][1000 genomes] |
| rs12359980 | 1.00[ASN][1000 genomes] |
| rs17154006 | 1.00[ASN][1000 genomes] |
| rs17154012 | 1.00[ASN][1000 genomes] |
| rs17154020 | 1.00[ASN][1000 genomes] |
| rs17447133 | 1.00[ASN][1000 genomes] |
| rs17447468 | 1.00[ASN][1000 genomes] |
| rs17447580 | 1.00[ASN][1000 genomes] |
| rs34966945 | 1.00[ASN][1000 genomes] |
| rs41313824 | 1.00[ASN][1000 genomes] |
| rs4646975 | 1.00[ASN][1000 genomes] |
| rs57740712 | 1.00[ASN][1000 genomes] |
| rs59220072 | 1.00[ASN][1000 genomes] |
| rs60163354 | 1.00[ASN][1000 genomes] |
| rs61858993 | 1.00[ASN][1000 genomes] |
| rs61858995 | 1.00[ASN][1000 genomes] |
| rs61859001 | 1.00[ASN][1000 genomes] |
| rs61859164 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs61859177 | 1.00[ASN][1000 genomes] |
| rs61859179 | 1.00[ASN][1000 genomes] |
| rs61859180 | 1.00[ASN][1000 genomes] |
| rs61859181 | 1.00[ASN][1000 genomes] |
| rs61859182 | 1.00[ASN][1000 genomes] |
| rs61859185 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61859203 | 1.00[ASN][1000 genomes] |
| rs61859204 | 1.00[ASN][1000 genomes] |
| rs61859207 | 1.00[ASN][1000 genomes] |
| rs61859221 | 1.00[ASN][1000 genomes] |
| rs61859998 | 1.00[ASN][1000 genomes] |
| rs61860007 | 1.00[ASN][1000 genomes] |
| rs61861561 | 1.00[ASN][1000 genomes] |
| rs61861563 | 1.00[ASN][1000 genomes] |
| rs61861566 | 1.00[ASN][1000 genomes] |
| rs61861567 | 1.00[ASN][1000 genomes] |
| rs7073767 | 1.00[ASN][1000 genomes] |
| rs7084706 | 1.00[ASN][1000 genomes] |
| rs7093434 | 1.00[ASN][1000 genomes] |
| rs7100846 | 1.00[ASN][1000 genomes] |
| rs7903467 | 1.00[ASN][1000 genomes] |
| rs7903833 | 1.00[ASN][1000 genomes] |
| rs7905073 | 1.00[ASN][1000 genomes] |
| rs7906484 | 1.00[ASN][1000 genomes] |
| rs7913352 | 1.00[ASN][1000 genomes] |
| rs7916345 | 1.00[ASN][1000 genomes] |
| rs7920408 | 1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:44091400-44101400 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 2 | chr10:44091800-44101200 | Weak transcription | Stomach Smooth Muscle | stomach |
| 3 | chr10:44092200-44101400 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
| 4 | chr10:44093000-44101600 | Weak transcription | Primary T cells from cord blood | blood |
| 5 | chr10:44095000-44101400 | Weak transcription | Spleen | Spleen |
