Variant report

Variant	rs12359520
Chromosome Location	chr10:43974985-43974986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11238518	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs11238519	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11238520	1.00[ASN][1000 genomes]
rs11238531	1.00[ASN][1000 genomes]
rs11238533	1.00[ASN][1000 genomes]
rs11238547	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238570	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238591	1.00[ASN][1000 genomes]
rs11238605	1.00[ASN][1000 genomes]
rs12263722	1.00[ASN][1000 genomes]
rs12356024	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356570	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359825	1.00[CEU][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359980	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154006	1.00[ASN][1000 genomes]
rs17154012	1.00[ASN][1000 genomes]
rs17154020	1.00[ASN][1000 genomes]
rs17366560	1.00[ASN][1000 genomes]
rs17447133	1.00[ASN][1000 genomes]
rs17447468	1.00[ASN][1000 genomes]
rs17447580	1.00[ASN][1000 genomes]
rs41313824	1.00[ASN][1000 genomes]
rs4646975	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948720	1.00[ASN][1000 genomes]
rs56120769	1.00[ASN][1000 genomes]
rs57740712	1.00[ASN][1000 genomes]
rs59220072	1.00[ASN][1000 genomes]
rs60163354	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858993	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858995	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859001	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859177	1.00[ASN][1000 genomes]
rs61859178	1.00[ASN][1000 genomes]
rs61859179	1.00[ASN][1000 genomes]
rs61859180	1.00[ASN][1000 genomes]
rs61859181	1.00[ASN][1000 genomes]
rs61859182	1.00[ASN][1000 genomes]
rs61859185	1.00[ASN][1000 genomes]
rs61859203	1.00[ASN][1000 genomes]
rs61859204	1.00[ASN][1000 genomes]
rs61859441	1.00[ASN][1000 genomes]
rs61859445	1.00[ASN][1000 genomes]
rs61859998	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860007	1.00[ASN][1000 genomes]
rs61860889	1.00[ASN][1000 genomes]
rs67284218	1.00[ASN][1000 genomes]
rs7073767	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079012	1.00[ASN][1000 genomes]
rs7084706	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093434	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100846	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900284	1.00[ASN][1000 genomes]
rs7903467	1.00[ASN][1000 genomes]
rs7905073	1.00[ASN][1000 genomes]
rs7906169	0.82[EUR][1000 genomes]
rs7906484	1.00[ASN][1000 genomes]
rs7913352	1.00[ASN][1000 genomes]
rs7916345	1.00[ASN][1000 genomes]
rs7920408	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv1043746	chr10:43940898-43977155	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43952000-43977200	Weak transcription	HSMMtube	muscle
2	chr10:43952200-43975200	Weak transcription	Fetal Stomach	stomach
3	chr10:43952400-43976200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:43957800-43976600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr10:43957800-43977200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:43962800-43976400	Weak transcription	Primary T cells from cord blood	blood
7	chr10:43966600-43976400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:43967000-43976400	Weak transcription	Aorta	Aorta
9	chr10:43967400-43978600	Weak transcription	Pancreas	Pancrea
10	chr10:43968000-43976400	Weak transcription	Ovary	ovary
11	chr10:43968800-43977200	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:43969000-43977000	Weak transcription	Brain Anterior Caudate	brain
13	chr10:43969400-43977200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:43969600-43977200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:43969800-43978200	Weak transcription	Fetal Kidney	kidney
16	chr10:43971200-43976400	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:43972200-43976400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:43972200-43976400	Weak transcription	Adipose Nuclei	Adipose
19	chr10:43972200-43976800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:43972400-43976000	Weak transcription	Liver	Liver
21	chr10:43974600-43975200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr10:43974600-43975400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:43974600-43975400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:43974800-43975200	ZNF genes & repeats	Primary B cells from cord blood	blood
25	chr10:43974800-43975200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:43974800-43977200	Weak transcription	Gastric	stomach
27	chr10:43974800-43982600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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