Variant report

Variant	rs61859179
Chromosome Location	chr10:44100844-44100845
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr10:44100749-44100846	H1-hESC	embryonic stem cell:	n/a	n/a
2	ESR1	chr10:44100662-44101035	T-47D	breast:	n/a	n/a
3	GATA3	chr10:44100696-44101775	T-47D	breast:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44100612..44103408-chr10:44143126..44145241,3	MCF-7	breast:
2	chr10:44068620..44071892-chr10:44099602..44104778,6	MCF-7	breast:
3	chr10:44100401..44102576-chr10:44125762..44128541,3	MCF-7	breast:
4	chr10:43901770..43904893-chr10:44100789..44103373,5	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF485	TF binding region
ENSG00000238263	Chromatin interaction
ENSG00000169813	Chromatin interaction
ENSG00000237389	Chromatin interaction
ENSG00000169740	Chromatin interaction
ENSG00000196793	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10899858	1.00[ASN][1000 genomes]
rs10899859	1.00[ASN][1000 genomes]
rs10899881	1.00[ASN][1000 genomes]
rs10899885	1.00[ASN][1000 genomes]
rs11238547	1.00[ASN][1000 genomes]
rs11238570	1.00[ASN][1000 genomes]
rs11238591	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238605	1.00[ASN][1000 genomes]
rs11238628	1.00[ASN][1000 genomes]
rs11238635	1.00[ASN][1000 genomes]
rs11238638	1.00[ASN][1000 genomes]
rs11238645	1.00[ASN][1000 genomes]
rs11238647	1.00[ASN][1000 genomes]
rs11238673	1.00[ASN][1000 genomes]
rs11238674	1.00[ASN][1000 genomes]
rs11238675	1.00[ASN][1000 genomes]
rs11238677	1.00[ASN][1000 genomes]
rs11238678	1.00[ASN][1000 genomes]
rs11238679	1.00[ASN][1000 genomes]
rs11238689	1.00[ASN][1000 genomes]
rs11238695	1.00[ASN][1000 genomes]
rs11238704	1.00[ASN][1000 genomes]
rs11591525	1.00[ASN][1000 genomes]
rs11592645	1.00[ASN][1000 genomes]
rs11598020	1.00[ASN][1000 genomes]
rs12263722	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356024	1.00[ASN][1000 genomes]
rs12356570	1.00[ASN][1000 genomes]
rs12358200	1.00[ASN][1000 genomes]
rs12359520	1.00[ASN][1000 genomes]
rs12359825	1.00[ASN][1000 genomes]
rs12359980	1.00[ASN][1000 genomes]
rs17154006	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154020	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17447133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17447468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17447580	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34966945	1.00[ASN][1000 genomes]
rs41313824	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646975	1.00[ASN][1000 genomes]
rs57740712	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59220072	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60163354	1.00[ASN][1000 genomes]
rs61858993	1.00[ASN][1000 genomes]
rs61858995	1.00[ASN][1000 genomes]
rs61859001	1.00[ASN][1000 genomes]
rs61859177	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859178	1.00[ASN][1000 genomes]
rs61859180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859185	1.00[ASN][1000 genomes]
rs61859203	1.00[ASN][1000 genomes]
rs61859204	1.00[ASN][1000 genomes]
rs61859207	1.00[ASN][1000 genomes]
rs61859221	1.00[ASN][1000 genomes]
rs61859998	1.00[ASN][1000 genomes]
rs61860007	1.00[ASN][1000 genomes]
rs61861561	1.00[ASN][1000 genomes]
rs61861563	1.00[ASN][1000 genomes]
rs61861566	1.00[ASN][1000 genomes]
rs61861567	1.00[ASN][1000 genomes]
rs7073767	1.00[ASN][1000 genomes]
rs7093434	1.00[ASN][1000 genomes]
rs7100846	1.00[ASN][1000 genomes]
rs7903467	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903833	1.00[ASN][1000 genomes]
rs7905073	1.00[ASN][1000 genomes]
rs7906484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916345	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920408	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947897	chr10:44098895-44102321	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44091400-44101400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:44091800-44101200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:44092200-44101400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:44093000-44101600	Weak transcription	Primary T cells from cord blood	blood
5	chr10:44095000-44101400	Weak transcription	Spleen	Spleen
6	chr10:44098200-44101400	Weak transcription	Gastric	stomach
7	chr10:44100400-44101200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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