Variant report

Variant	rs17447133
Chromosome Location	chr10:44103230-44103231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:44101715-44104132	K562	blood:	n/a	n/a
2	POLR2A	chr10:44101708-44103382	K562	blood:	n/a	n/a
3	POLR2A	chr10:44101693-44103602	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44100612..44103408-chr10:44143126..44145241,3	MCF-7	breast:
2	chr10:44101948..44103736-chr10:44112842..44114358,2	MCF-7	breast:
3	chr10:44089879..44092724-chr10:44102524..44104158,2	MCF-7	breast:
4	chr10:44068620..44071892-chr10:44099602..44104778,6	MCF-7	breast:
5	chr10:43891174..43892847-chr10:44101479..44103589,2	K562	blood:
6	chr10:44101689..44104570-chr10:44142385..44144867,2	K562	blood:
7	chr10:43901770..43904893-chr10:44100789..44103373,5	MCF-7	breast:

No data

Variant related genes	Relation type
CAP1P2	TF binding region
ENSG00000196793	Chromatin interaction
ENSG00000169813	Chromatin interaction
ENSG00000169740	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10899858	1.00[ASN][1000 genomes]
rs10899859	1.00[ASN][1000 genomes]
rs10899881	1.00[ASN][1000 genomes]
rs10899885	1.00[ASN][1000 genomes]
rs11238547	1.00[ASN][1000 genomes]
rs11238570	1.00[ASN][1000 genomes]
rs11238591	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238605	1.00[ASN][1000 genomes]
rs11238628	1.00[ASN][1000 genomes]
rs11238635	1.00[ASN][1000 genomes]
rs11238638	1.00[ASN][1000 genomes]
rs11238645	1.00[ASN][1000 genomes]
rs11238647	1.00[ASN][1000 genomes]
rs11238673	1.00[ASN][1000 genomes]
rs11238674	1.00[ASN][1000 genomes]
rs11238675	1.00[ASN][1000 genomes]
rs11238677	1.00[ASN][1000 genomes]
rs11238678	1.00[ASN][1000 genomes]
rs11238679	1.00[ASN][1000 genomes]
rs11238689	1.00[ASN][1000 genomes]
rs11238695	1.00[ASN][1000 genomes]
rs11238704	1.00[ASN][1000 genomes]
rs11238711	1.00[ASN][1000 genomes]
rs11591525	1.00[ASN][1000 genomes]
rs11592645	1.00[ASN][1000 genomes]
rs11598020	1.00[ASN][1000 genomes]
rs12263722	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356024	1.00[ASN][1000 genomes]
rs12356570	1.00[ASN][1000 genomes]
rs12358200	1.00[ASN][1000 genomes]
rs12359520	1.00[ASN][1000 genomes]
rs12359825	1.00[ASN][1000 genomes]
rs12359980	1.00[ASN][1000 genomes]
rs17154006	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154012	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154020	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17447468	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17447580	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34966945	1.00[ASN][1000 genomes]
rs41313824	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57740712	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59220072	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60163354	1.00[ASN][1000 genomes]
rs61858993	1.00[ASN][1000 genomes]
rs61858995	1.00[ASN][1000 genomes]
rs61859001	1.00[ASN][1000 genomes]
rs61859177	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859178	1.00[ASN][1000 genomes]
rs61859179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859185	1.00[ASN][1000 genomes]
rs61859203	1.00[ASN][1000 genomes]
rs61859204	1.00[ASN][1000 genomes]
rs61859207	1.00[ASN][1000 genomes]
rs61859221	1.00[ASN][1000 genomes]
rs61859998	1.00[ASN][1000 genomes]
rs61860007	1.00[ASN][1000 genomes]
rs61861561	1.00[ASN][1000 genomes]
rs61861563	1.00[ASN][1000 genomes]
rs61861566	1.00[ASN][1000 genomes]
rs61861567	1.00[ASN][1000 genomes]
rs7073767	1.00[ASN][1000 genomes]
rs7093434	1.00[ASN][1000 genomes]
rs7100846	1.00[ASN][1000 genomes]
rs7903467	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903833	1.00[ASN][1000 genomes]
rs7905073	1.00[ASN][1000 genomes]
rs7906484	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913352	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916345	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920408	1.00[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44102400-44108800	Weak transcription	Aorta	Aorta
2	chr10:44102600-44103600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:44102600-44104000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:44102600-44104200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:44102600-44105200	Weak transcription	Right Atrium	heart
6	chr10:44102600-44108400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:44102600-44108600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:44102600-44112200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:44102800-44103600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:44102800-44103600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:44102800-44103600	Weak transcription	Fetal Intestine Large	intestine
12	chr10:44102800-44103800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:44102800-44103800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:44102800-44103800	Weak transcription	Liver	Liver
15	chr10:44102800-44103800	Weak transcription	Fetal Stomach	stomach
16	chr10:44102800-44104000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr10:44102800-44104000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:44102800-44104000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:44102800-44104000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:44102800-44104000	Weak transcription	Ovary	ovary
21	chr10:44102800-44104000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:44102800-44104200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr10:44102800-44104400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:44102800-44104400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:44102800-44104600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:44102800-44104600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:44102800-44104600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:44102800-44104600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr10:44102800-44104600	Weak transcription	NHEK	skin
30	chr10:44102800-44105200	Weak transcription	HSMMtube	muscle
31	chr10:44102800-44105200	Weak transcription	NHLF	lung
32	chr10:44102800-44105400	Weak transcription	HSMM	muscle
33	chr10:44102800-44106200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:44102800-44107000	Weak transcription	Spleen	Spleen
35	chr10:44102800-44108800	Weak transcription	Esophagus	oesophagus
36	chr10:44102800-44108800	Weak transcription	Lung	lung
37	chr10:44102800-44108800	Weak transcription	NH-A	brain
38	chr10:44102800-44108800	Weak transcription	NHDF-Ad	bronchial
39	chr10:44102800-44109200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:44102800-44109600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:44102800-44109800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr10:44102800-44109800	Weak transcription	Thymus	Thymus
43	chr10:44102800-44110200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr10:44102800-44110800	Weak transcription	Gastric	stomach
45	chr10:44102800-44110800	Weak transcription	Small Intestine	intestine
46	chr10:44102800-44110800	Weak transcription	Stomach Mucosa	stomach
47	chr10:44102800-44111000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:44102800-44111200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:44102800-44111200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:44102800-44111400	Weak transcription	Brain Hippocampus Middle	brain

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