Variant report
| Variant | rs11238679 |
|---|---|
| Chromosome Location | chr10:44233628-44233629 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:62)
| rs_ID | r2[population] |
|---|---|
| rs10899858 | 1.00[ASN][1000 genomes] |
| rs10899859 | 1.00[ASN][1000 genomes] |
| rs10899881 | 1.00[ASN][1000 genomes] |
| rs10899885 | 1.00[ASN][1000 genomes] |
| rs11238591 | 1.00[ASN][1000 genomes] |
| rs11238605 | 1.00[ASN][1000 genomes] |
| rs11238628 | 1.00[ASN][1000 genomes] |
| rs11238635 | 1.00[ASN][1000 genomes] |
| rs11238638 | 1.00[ASN][1000 genomes] |
| rs11238645 | 1.00[ASN][1000 genomes] |
| rs11238647 | 1.00[ASN][1000 genomes] |
| rs11238664 | 0.90[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap] |
| rs11238673 | 1.00[ASN][1000 genomes] |
| rs11238674 | 1.00[ASN][1000 genomes] |
| rs11238675 | 1.00[ASN][1000 genomes] |
| rs11238677 | 1.00[ASN][1000 genomes] |
| rs11238678 | 1.00[ASN][1000 genomes] |
| rs11238689 | 1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11238695 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11238704 | 1.00[ASN][1000 genomes] |
| rs11238711 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11591525 | 1.00[ASN][1000 genomes] |
| rs11592645 | 1.00[ASN][1000 genomes] |
| rs11598020 | 1.00[ASN][1000 genomes] |
| rs12263722 | 1.00[ASN][1000 genomes] |
| rs12358200 | 0.90[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs17154006 | 1.00[ASN][1000 genomes] |
| rs17154012 | 1.00[ASN][1000 genomes] |
| rs17154020 | 1.00[ASN][1000 genomes] |
| rs17447133 | 1.00[ASN][1000 genomes] |
| rs17447468 | 1.00[ASN][1000 genomes] |
| rs17447580 | 1.00[ASN][1000 genomes] |
| rs17463850 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1998750 | 1.00[CHB][hapmap] |
| rs2005094 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34966945 | 1.00[ASN][1000 genomes] |
| rs41313824 | 1.00[ASN][1000 genomes] |
| rs57740712 | 1.00[ASN][1000 genomes] |
| rs59220072 | 1.00[ASN][1000 genomes] |
| rs61859177 | 1.00[ASN][1000 genomes] |
| rs61859178 | 1.00[ASN][1000 genomes] |
| rs61859179 | 1.00[ASN][1000 genomes] |
| rs61859180 | 1.00[ASN][1000 genomes] |
| rs61859181 | 1.00[ASN][1000 genomes] |
| rs61859182 | 1.00[ASN][1000 genomes] |
| rs61859185 | 1.00[ASN][1000 genomes] |
| rs61859203 | 1.00[ASN][1000 genomes] |
| rs61859204 | 1.00[ASN][1000 genomes] |
| rs61859207 | 1.00[ASN][1000 genomes] |
| rs61859221 | 1.00[ASN][1000 genomes] |
| rs61859388 | 1.00[ASN][1000 genomes] |
| rs61859402 | 1.00[ASN][1000 genomes] |
| rs61861561 | 1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61861563 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61861566 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61861567 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61861585 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7903467 | 1.00[ASN][1000 genomes] |
| rs7903833 | 1.00[ASN][1000 genomes] |
| rs7906484 | 1.00[ASN][1000 genomes] |
| rs7913352 | 1.00[ASN][1000 genomes] |
| rs7916345 | 1.00[ASN][1000 genomes] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11238679 | GPRIN2 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:44228000-44235400 | Weak transcription | Right Atrium | heart |
| 2 | chr10:44232400-44235400 | Enhancers | Fetal Muscle Leg | muscle |
| 3 | chr10:44233400-44234200 | Weak transcription | Fetal Brain Male | brain |
| 4 | chr10:44233600-44235600 | Enhancers | NHDF-Ad | bronchial |
