Variant report

Variant	rs7920408
Chromosome Location	chr10:43910821-43910822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43907404..43911087-chr10:43912336..43916767,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230555	Chromatin interaction
ENSG00000221400	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11238518	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11238519	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238520	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11238531	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238533	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238547	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238570	1.00[ASN][1000 genomes]
rs11238591	1.00[ASN][1000 genomes]
rs12263722	1.00[ASN][1000 genomes]
rs12354765	0.85[AMR][1000 genomes]
rs12356024	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356570	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359520	1.00[ASN][1000 genomes]
rs12359825	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359980	1.00[ASN][1000 genomes]
rs17154006	1.00[ASN][1000 genomes]
rs17154012	1.00[ASN][1000 genomes]
rs17154020	1.00[ASN][1000 genomes]
rs17366560	1.00[ASN][1000 genomes]
rs17447133	1.00[ASN][1000 genomes]
rs17447468	1.00[ASN][1000 genomes]
rs17447580	1.00[ASN][1000 genomes]
rs41313824	1.00[ASN][1000 genomes]
rs4646975	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948720	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56120769	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57740712	1.00[ASN][1000 genomes]
rs59220072	1.00[ASN][1000 genomes]
rs60163354	1.00[ASN][1000 genomes]
rs61845676	1.00[ASN][1000 genomes]
rs61845680	1.00[ASN][1000 genomes]
rs61845682	1.00[ASN][1000 genomes]
rs61858993	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858995	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859001	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859177	1.00[ASN][1000 genomes]
rs61859178	1.00[ASN][1000 genomes]
rs61859179	1.00[ASN][1000 genomes]
rs61859180	1.00[ASN][1000 genomes]
rs61859181	1.00[ASN][1000 genomes]
rs61859182	1.00[ASN][1000 genomes]
rs61859185	1.00[ASN][1000 genomes]
rs61859441	1.00[ASN][1000 genomes]
rs61859445	1.00[ASN][1000 genomes]
rs61859998	1.00[ASN][1000 genomes]
rs61860007	1.00[ASN][1000 genomes]
rs61860889	1.00[ASN][1000 genomes]
rs67284218	1.00[ASN][1000 genomes]
rs7073767	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079012	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084706	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093434	1.00[ASN][1000 genomes]
rs7100846	1.00[ASN][1000 genomes]
rs7900284	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903467	1.00[ASN][1000 genomes]
rs7905073	1.00[ASN][1000 genomes]
rs7906169	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7906484	1.00[ASN][1000 genomes]
rs7913352	1.00[ASN][1000 genomes]
rs7916345	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv825354	chr10:43883418-43949936	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv825355	chr10:43890579-43923802	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv825356	chr10:43893080-43946515	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43905600-43913600	Weak transcription	Esophagus	oesophagus
2	chr10:43905800-43911000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:43905800-43913400	Weak transcription	Fetal Intestine Small	intestine
4	chr10:43905800-43913800	Weak transcription	Stomach Mucosa	stomach
5	chr10:43905800-43915600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:43905800-43915600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:43906000-43915800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:43906200-43911600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:43906200-43911600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:43906200-43911800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:43906200-43912000	Weak transcription	Dnd41	blood
12	chr10:43906200-43915200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:43906400-43915600	Weak transcription	Hela-S3	cervix
14	chr10:43907600-43915600	Weak transcription	NHEK	skin
15	chr10:43907800-43913600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:43908800-43912600	Enhancers	K562	blood
17	chr10:43909000-43911000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:43909000-43913400	Weak transcription	HepG2	liver
19	chr10:43909000-43913600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:43909200-43912400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr10:43909200-43912400	Weak transcription	Monocytes-CD14+_RO01746	blood

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