Variant report

Variant	rs61845676
Chromosome Location	chr10:43713273-43713274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43705495..43708277-chr10:43710722..43714581,3	K562	blood:
2	chr10:43705914..43707657-chr10:43711294..43713443,2	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1106646	1.00[ASN][1000 genomes]
rs1106647	1.00[ASN][1000 genomes]
rs11238518	1.00[ASN][1000 genomes]
rs11238519	1.00[ASN][1000 genomes]
rs11238520	1.00[ASN][1000 genomes]
rs11238531	1.00[ASN][1000 genomes]
rs11238533	1.00[ASN][1000 genomes]
rs17347902	1.00[ASN][1000 genomes]
rs17347944	1.00[ASN][1000 genomes]
rs17366560	1.00[ASN][1000 genomes]
rs17432429	1.00[ASN][1000 genomes]
rs17432532	1.00[ASN][1000 genomes]
rs17432714	1.00[ASN][1000 genomes]
rs17432763	1.00[ASN][1000 genomes]
rs17432833	1.00[ASN][1000 genomes]
rs3026691	1.00[ASN][1000 genomes]
rs3026692	1.00[ASN][1000 genomes]
rs3026695	1.00[ASN][1000 genomes]
rs3026700	1.00[ASN][1000 genomes]
rs4646975	1.00[ASN][1000 genomes]
rs4948720	1.00[ASN][1000 genomes]
rs56120769	1.00[ASN][1000 genomes]
rs61843172	1.00[ASN][1000 genomes]
rs61843173	1.00[ASN][1000 genomes]
rs61843174	1.00[ASN][1000 genomes]
rs61843175	1.00[ASN][1000 genomes]
rs61843176	1.00[ASN][1000 genomes]
rs61843177	1.00[ASN][1000 genomes]
rs61843178	1.00[ASN][1000 genomes]
rs61843179	1.00[ASN][1000 genomes]
rs61843180	1.00[ASN][1000 genomes]
rs61843181	1.00[ASN][1000 genomes]
rs61843182	1.00[ASN][1000 genomes]
rs61843183	1.00[ASN][1000 genomes]
rs61843184	1.00[ASN][1000 genomes]
rs61843185	1.00[ASN][1000 genomes]
rs61843186	1.00[ASN][1000 genomes]
rs61843187	1.00[ASN][1000 genomes]
rs61843188	1.00[ASN][1000 genomes]
rs61843189	1.00[ASN][1000 genomes]
rs61843190	1.00[ASN][1000 genomes]
rs61843191	1.00[ASN][1000 genomes]
rs61843192	1.00[ASN][1000 genomes]
rs61843196	1.00[ASN][1000 genomes]
rs61843198	1.00[ASN][1000 genomes]
rs61843199	1.00[ASN][1000 genomes]
rs61843201	1.00[ASN][1000 genomes]
rs61845323	1.00[ASN][1000 genomes]
rs61845324	1.00[ASN][1000 genomes]
rs61845325	1.00[ASN][1000 genomes]
rs61845326	1.00[ASN][1000 genomes]
rs61845327	1.00[ASN][1000 genomes]
rs61845328	1.00[ASN][1000 genomes]
rs61845329	1.00[ASN][1000 genomes]
rs61845330	1.00[ASN][1000 genomes]
rs61845331	1.00[ASN][1000 genomes]
rs61845332	1.00[ASN][1000 genomes]
rs61845333	1.00[ASN][1000 genomes]
rs61845335	1.00[ASN][1000 genomes]
rs61845336	1.00[ASN][1000 genomes]
rs61845338	1.00[ASN][1000 genomes]
rs61845339	1.00[ASN][1000 genomes]
rs61845340	1.00[ASN][1000 genomes]
rs61845341	1.00[ASN][1000 genomes]
rs61845342	1.00[ASN][1000 genomes]
rs61845343	1.00[ASN][1000 genomes]
rs61845345	1.00[ASN][1000 genomes]
rs61845346	1.00[ASN][1000 genomes]
rs61845680	1.00[ASN][1000 genomes]
rs61845682	1.00[ASN][1000 genomes]
rs61859441	1.00[ASN][1000 genomes]
rs61859445	1.00[ASN][1000 genomes]
rs61860889	1.00[ASN][1000 genomes]
rs67284218	1.00[ASN][1000 genomes]
rs7079012	1.00[ASN][1000 genomes]
rs7084706	1.00[ASN][1000 genomes]
rs7100455	1.00[ASN][1000 genomes]
rs7898367	1.00[ASN][1000 genomes]
rs7900284	1.00[ASN][1000 genomes]
rs7920408	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	esv1831010	chr10:43674916-43759185	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv895084	chr10:43688505-43765485	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv466881	chr10:43695049-43799588	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv550696	chr10:43695049-43799588	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv895085	chr10:43695049-43804617	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43698000-43722800	Weak transcription	Gastric	stomach
2	chr10:43699400-43716800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:43699400-43724600	Weak transcription	Right Atrium	heart
4	chr10:43708200-43713600	Weak transcription	Brain Substantia Nigra	brain
5	chr10:43708400-43716400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:43709600-43714800	Enhancers	Fetal Brain Male	brain
7	chr10:43711200-43717200	Enhancers	Brain Hippocampus Middle	brain
8	chr10:43711400-43713600	Weak transcription	Brain Angular Gyrus	brain
9	chr10:43711400-43713800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:43711400-43714000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:43711400-43714200	Enhancers	Brain Germinal Matrix	brain
12	chr10:43711400-43716600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:43711800-43717200	Weak transcription	Spleen	Spleen
14	chr10:43712000-43713800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:43712000-43713800	Weak transcription	Fetal Brain Female	brain
16	chr10:43712200-43713400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:43712400-43714000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:43712600-43714000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:43712600-43715000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr10:43712600-43715600	Enhancers	Brain Cingulate Gyrus	brain
21	chr10:43712800-43716400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:43713000-43713400	Weak transcription	Brain Anterior Caudate	brain
23	chr10:43713000-43713600	Enhancers	Fetal Muscle Leg	muscle
24	chr10:43713000-43715400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:43713200-43713600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
26	chr10:43713200-43715200	Enhancers	Cortex derived primary cultured neurospheres	brain

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