Variant report

Variant	rs56935737
Chromosome Location	chr10:44229837-44229838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44222418..44225154-chr10:44227350..44232031,4	K562	blood:
2	chr10:44222418..44225154-chr10:44229616..44232031,2	K562	blood:

Variant related genes	Relation type
ENSG00000271173	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10508870	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10508871	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10508872	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11238641	0.84[ASN][1000 genomes]
rs11238646	0.86[ASN][1000 genomes]
rs17154164	0.84[ASN][1000 genomes]
rs17154173	0.84[ASN][1000 genomes]
rs17154178	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17154182	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17154237	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154294	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17154300	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17154313	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17154318	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17154325	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17154388	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35542796	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4146639	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56800667	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57137545	0.84[ASN][1000 genomes]
rs57430423	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57517635	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57720202	0.89[EUR][1000 genomes]
rs58197647	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58967637	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58977619	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59003973	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59069351	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59124816	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59228864	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59235630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59238114	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59303606	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59579985	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59968020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60580954	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60799950	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61185278	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61405658	0.84[ASN][1000 genomes]
rs61528945	0.89[EUR][1000 genomes]
rs7084833	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73266552	0.84[ASN][1000 genomes]
rs73266553	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73266556	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73266557	0.84[ASN][1000 genomes]
rs73266574	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73268420	1.00[ASN][1000 genomes]
rs73268460	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73268466	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7899244	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs871834	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439708	chr10:44229638-44229893	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44228000-44235400	Weak transcription	Right Atrium	heart
2	chr10:44229800-44231000	Weak transcription	NHDF-Ad	bronchial

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