Variant report

Variant	rs59238114
Chromosome Location	chr10:44202820-44202821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44202572..44204075-chr10:44209232..44212140,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10508870	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508871	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508872	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238641	0.98[ASN][1000 genomes]
rs11238646	0.95[ASN][1000 genomes]
rs17154164	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154173	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154178	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154182	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154237	0.84[ASN][1000 genomes]
rs17154294	0.81[ASN][1000 genomes]
rs17154300	0.81[ASN][1000 genomes]
rs35542796	1.00[ASN][1000 genomes]
rs4146639	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56935737	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57137545	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57517635	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58197647	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58967637	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59124816	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59228864	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59235630	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59303606	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59968020	0.84[ASN][1000 genomes]
rs60580954	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60799950	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61185278	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61405658	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266552	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266553	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266556	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73266557	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266574	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268420	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73268460	0.80[ASN][1000 genomes]
rs73268466	0.81[ASN][1000 genomes]
rs7899244	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44195800-44203200	Weak transcription	Ovary	ovary
2	chr10:44196000-44203800	Weak transcription	Right Atrium	heart
3	chr10:44198600-44203000	Weak transcription	Pancreas	Pancrea
4	chr10:44198800-44203000	Weak transcription	Right Ventricle	heart
5	chr10:44198800-44203200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:44202000-44203000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:44202000-44203000	Weak transcription	Left Ventricle	heart
8	chr10:44202000-44203000	Weak transcription	Lung	lung
9	chr10:44202000-44203000	Weak transcription	Spleen	Spleen
10	chr10:44202000-44203200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:44202600-44204200	Enhancers	Adipose Nuclei	Adipose
12	chr10:44202600-44204200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:44202800-44204400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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