Variant report

Variant	rs17154173
Chromosome Location	chr10:44195467-44195468
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10508870	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508871	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508872	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238641	0.98[ASN][1000 genomes]
rs11238646	0.95[ASN][1000 genomes]
rs11238709	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs12359707	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs17154164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154178	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154182	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154237	0.84[ASN][1000 genomes]
rs17154269	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs17154294	0.81[ASN][1000 genomes]
rs17154300	0.81[ASN][1000 genomes]
rs35542796	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4146639	0.97[ASN][1000 genomes]
rs56935737	0.84[ASN][1000 genomes]
rs57137545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57517635	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58197647	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58747520	0.88[AFR][1000 genomes]
rs58967637	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59124816	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59228864	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59235630	0.84[ASN][1000 genomes]
rs59238114	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59303606	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59968020	0.84[ASN][1000 genomes]
rs60580954	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60799950	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61185278	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61405658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266552	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266553	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266556	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73266557	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266574	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268420	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73268460	0.80[ASN][1000 genomes]
rs73268466	0.81[ASN][1000 genomes]
rs7899244	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914240	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762859	chr10:44193509-44200087	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44188000-44196800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44191800-44196400	Enhancers	Fetal Heart	heart
3	chr10:44191800-44197000	Enhancers	Right Ventricle	heart
4	chr10:44192600-44195800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:44192600-44196000	Weak transcription	Fetal Kidney	kidney
6	chr10:44192600-44196600	Enhancers	Fetal Muscle Trunk	muscle
7	chr10:44192800-44196000	Enhancers	Left Ventricle	heart
8	chr10:44193000-44196000	Enhancers	Right Atrium	heart
9	chr10:44193800-44196000	Enhancers	Fetal Lung	lung
10	chr10:44193800-44196200	Enhancers	HSMMtube	muscle
11	chr10:44194400-44196400	Enhancers	Fetal Muscle Leg	muscle
12	chr10:44194400-44196400	Enhancers	Fetal Stomach	stomach
13	chr10:44194600-44195800	Enhancers	Ovary	ovary
14	chr10:44194600-44196200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:44194800-44197800	Weak transcription	Spleen	Spleen
16	chr10:44195400-44196400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:44195400-44196400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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