Variant report

Variant	rs58747520
Chromosome Location	chr10:44196399-44196400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10508870	0.88[AFR][1000 genomes]
rs10508871	0.88[AFR][1000 genomes]
rs10508872	0.88[AFR][1000 genomes]
rs17154164	0.88[AFR][1000 genomes]
rs17154173	0.88[AFR][1000 genomes]
rs17154178	0.88[AFR][1000 genomes]
rs17154182	0.88[AFR][1000 genomes]
rs57137545	0.88[AFR][1000 genomes]
rs57517635	0.88[AFR][1000 genomes]
rs58197647	0.88[AFR][1000 genomes]
rs58967637	0.88[AFR][1000 genomes]
rs59124816	0.88[AFR][1000 genomes]
rs59228864	0.88[AFR][1000 genomes]
rs59303606	0.88[AFR][1000 genomes]
rs60580954	0.88[AFR][1000 genomes]
rs60799950	0.88[AFR][1000 genomes]
rs61185278	0.88[AFR][1000 genomes]
rs61405658	0.88[AFR][1000 genomes]
rs73266513	1.00[AMR][1000 genomes]
rs73266515	1.00[AMR][1000 genomes]
rs73266540	1.00[AMR][1000 genomes]
rs73266553	0.88[AFR][1000 genomes]
rs73266556	0.88[AFR][1000 genomes]
rs73266557	0.83[AFR][1000 genomes]
rs73266574	0.88[AFR][1000 genomes]
rs7899244	0.88[AFR][1000 genomes]
rs7914240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762859	chr10:44193509-44200087	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44188000-44196800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44191800-44196400	Enhancers	Fetal Heart	heart
3	chr10:44191800-44197000	Enhancers	Right Ventricle	heart
4	chr10:44192600-44196600	Enhancers	Fetal Muscle Trunk	muscle
5	chr10:44194400-44196400	Enhancers	Fetal Muscle Leg	muscle
6	chr10:44194400-44196400	Enhancers	Fetal Stomach	stomach
7	chr10:44194800-44197800	Weak transcription	Spleen	Spleen
8	chr10:44195400-44196400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:44195400-44196400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr10:44195600-44196400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:44195600-44196800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:44195800-44196800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:44195800-44203200	Weak transcription	Ovary	ovary
14	chr10:44196000-44198800	Weak transcription	Left Ventricle	heart
15	chr10:44196000-44203800	Weak transcription	Right Atrium	heart
16	chr10:44196200-44196400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:44196200-44196800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links