Variant report

Variant	rs73266556
Chromosome Location	chr10:44196114-44196115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44185602..44188536-chr10:44195679..44198454,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10508870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10508871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10508872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11238641	0.97[ASN][1000 genomes]
rs11238646	0.94[ASN][1000 genomes]
rs17154164	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17154173	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17154178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17154182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17154237	0.83[ASN][1000 genomes]
rs17154294	0.80[ASN][1000 genomes]
rs17154300	0.80[ASN][1000 genomes]
rs35542796	0.99[ASN][1000 genomes]
rs4146639	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56935737	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57137545	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57517635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58197647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58747520	0.88[AFR][1000 genomes]
rs58967637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59124816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59228864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59235630	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59238114	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59303606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59968020	0.83[ASN][1000 genomes]
rs60580954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60799950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61185278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61405658	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73266552	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73266553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73266557	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73266574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73268420	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73268466	0.80[ASN][1000 genomes]
rs7899244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7914240	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762859	chr10:44193509-44200087	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44188000-44196800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44191800-44196400	Enhancers	Fetal Heart	heart
3	chr10:44191800-44197000	Enhancers	Right Ventricle	heart
4	chr10:44192600-44196600	Enhancers	Fetal Muscle Trunk	muscle
5	chr10:44193800-44196200	Enhancers	HSMMtube	muscle
6	chr10:44194400-44196400	Enhancers	Fetal Muscle Leg	muscle
7	chr10:44194400-44196400	Enhancers	Fetal Stomach	stomach
8	chr10:44194600-44196200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:44194800-44197800	Weak transcription	Spleen	Spleen
10	chr10:44195400-44196400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:44195400-44196400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr10:44195600-44196200	Enhancers	Osteobl	bone
13	chr10:44195600-44196400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:44195600-44196800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:44195800-44196200	Enhancers	NHDF-Ad	bronchial
16	chr10:44195800-44196800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:44195800-44203200	Weak transcription	Ovary	ovary
18	chr10:44196000-44196200	Enhancers	Fetal Kidney	kidney
19	chr10:44196000-44198800	Weak transcription	Left Ventricle	heart
20	chr10:44196000-44203800	Weak transcription	Right Atrium	heart

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