Variant report

Variant	rs61525746
Chromosome Location	chr10:44358117-44358118
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44351789..44354047-chr10:44357316..44359324,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11238723	0.84[ASN][1000 genomes]
rs12778871	0.81[AMR][1000 genomes]
rs17154467	0.81[ASN][1000 genomes]
rs2298204	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56887761	0.82[ASN][1000 genomes]
rs56942692	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57376602	0.86[ASN][1000 genomes]
rs57438040	0.85[ASN][1000 genomes]
rs57645083	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57697881	0.86[ASN][1000 genomes]
rs57882812	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58009513	0.81[ASN][1000 genomes]
rs58280468	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58426522	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58526299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58838440	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59021054	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59084049	0.94[ASN][1000 genomes]
rs59274145	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59298548	0.83[ASN][1000 genomes]
rs59658376	0.99[ASN][1000 genomes]
rs59668941	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59834212	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59983288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60207525	0.86[ASN][1000 genomes]
rs60606176	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60833858	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60927183	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61071701	0.81[ASN][1000 genomes]
rs61110542	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859378	0.89[ASN][1000 genomes]
rs713496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275973	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73275981	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275989	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275990	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275995	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73275997	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73275998	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74138916	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7894713	0.84[AFR][1000 genomes]
rs7913725	0.83[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44352000-44359200	Weak transcription	Fetal Heart	heart
2	chr10:44353000-44359600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:44353200-44358200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:44353400-44358400	Weak transcription	Fetal Stomach	stomach
5	chr10:44353400-44358400	Weak transcription	Gastric	stomach
6	chr10:44353400-44358800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:44353400-44358800	Weak transcription	Pancreas	Pancrea
8	chr10:44353600-44359600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:44356800-44361200	Enhancers	NHDF-Ad	bronchial
10	chr10:44357000-44361000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:44357000-44361000	Enhancers	HUVEC	blood vessel
12	chr10:44357200-44360000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:44357200-44360000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:44357200-44360000	Enhancers	Osteobl	bone
15	chr10:44357200-44360400	Enhancers	NHLF	lung
16	chr10:44357200-44361000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:44357400-44359400	Enhancers	A549	lung
18	chr10:44357400-44359600	Enhancers	HepG2	liver
19	chr10:44357400-44359800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:44357400-44360000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:44357400-44360200	Enhancers	Hela-S3	cervix
22	chr10:44357400-44360400	Enhancers	NH-A	brain
23	chr10:44357400-44360600	Enhancers	Stomach Mucosa	stomach
24	chr10:44357600-44360000	Enhancers	Aorta	Aorta
25	chr10:44357600-44360200	Enhancers	HSMM	muscle
26	chr10:44357600-44360400	Enhancers	Fetal Intestine Small	intestine
27	chr10:44357600-44360600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:44357800-44358200	Enhancers	Fetal Kidney	kidney
29	chr10:44357800-44358400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:44357800-44359200	Enhancers	Spleen	Spleen
31	chr10:44357800-44359800	Enhancers	Lung	lung
32	chr10:44357800-44360400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:44357800-44360600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr10:44357800-44361600	Enhancers	Right Atrium	heart
35	chr10:44357800-44367200	Enhancers	Left Ventricle	heart
36	chr10:44358000-44358200	Enhancers	Psoas Muscle	Psoas
37	chr10:44358000-44359000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr10:44358000-44359000	Weak transcription	HSMMtube	muscle
39	chr10:44358000-44359800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:44358000-44360400	Enhancers	Colon Smooth Muscle	Colon
41	chr10:44358000-44360400	Enhancers	Fetal Intestine Large	intestine
42	chr10:44358000-44360400	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr10:44358000-44360600	Enhancers	Adipose Nuclei	Adipose

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