Variant report

Variant	rs57279559
Chromosome Location	chr10:44425932-44425933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1006870	0.88[EUR][1000 genomes]
rs17154727	0.88[EUR][1000 genomes]
rs17154815	0.88[EUR][1000 genomes]
rs17154842	0.88[EUR][1000 genomes]
rs2279553	0.88[EUR][1000 genomes]
rs2279554	0.88[EUR][1000 genomes]
rs57549604	0.88[EUR][1000 genomes]
rs57882812	1.00[AFR][1000 genomes]
rs59274145	1.00[AFR][1000 genomes]
rs60606176	1.00[AFR][1000 genomes]
rs61110542	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44421800-44426000	Enhancers	Fetal Heart	heart
2	chr10:44422800-44437600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44424400-44426600	Weak transcription	HSMMtube	muscle
4	chr10:44424600-44427400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:44424800-44427600	Enhancers	Osteobl	bone
6	chr10:44425000-44427600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44425000-44427800	Enhancers	NHDF-Ad	bronchial
8	chr10:44425200-44426200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:44425200-44426200	Weak transcription	Left Ventricle	heart
10	chr10:44425600-44427200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:44425600-44427600	Enhancers	HSMM	muscle
12	chr10:44425800-44427200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:44425800-44427400	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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