Variant report

Variant	rs17154842
Chromosome Location	chr10:44492045-44492046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44491930..44494556-chr10:44497105..44500011,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1006870	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10508879	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1114215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1114216	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17154727	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17154815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154903	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17154929	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17154938	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17155040	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17155044	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17155153	1.00[AFR][1000 genomes]
rs17155155	1.00[AFR][1000 genomes]
rs17155193	1.00[AFR][1000 genomes]
rs17155223	1.00[AFR][1000 genomes]
rs17468732	0.86[EUR][1000 genomes]
rs2086627	1.00[AFR][1000 genomes]
rs2101160	1.00[AFR][1000 genomes]
rs2279553	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2279554	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57279559	0.88[EUR][1000 genomes]
rs57549604	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72472009	1.00[AFR][1000 genomes]
rs956111	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44490000-44494000	Weak transcription	Spleen	Spleen
2	chr10:44492000-44492600	Weak transcription	Left Ventricle	heart
3	chr10:44492000-44493000	Weak transcription	Right Ventricle	heart
4	chr10:44492000-44494000	Weak transcription	Right Atrium	heart
5	chr10:44492000-44494600	Enhancers	Ovary	ovary

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