Variant report

Variant	rs10508879
Chromosome Location	chr10:44512553-44512554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1006870	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1114215	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1114216	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154727	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17154815	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17154842	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17154903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155040	1.00[AFR][1000 genomes]
rs17155044	1.00[AFR][1000 genomes]
rs17155153	1.00[AFR][1000 genomes]
rs17155155	1.00[AFR][1000 genomes]
rs17155193	1.00[AFR][1000 genomes]
rs17155223	1.00[AFR][1000 genomes]
rs17468732	0.86[EUR][1000 genomes]
rs2086627	1.00[AFR][1000 genomes]
rs2101160	1.00[AFR][1000 genomes]
rs2279553	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2279554	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs57549604	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72472009	1.00[AFR][1000 genomes]
rs956111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44504000-44513000	Weak transcription	Lung	lung
2	chr10:44506600-44513000	Weak transcription	Gastric	stomach
3	chr10:44507600-44512600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:44507600-44513200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:44507800-44513400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:44508400-44512800	Weak transcription	Spleen	Spleen
7	chr10:44508600-44512800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:44510400-44512600	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr10:44510400-44513600	Enhancers	Ovary	ovary
10	chr10:44510600-44513200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr10:44510600-44513400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:44510600-44513800	Enhancers	Adipose Nuclei	Adipose
13	chr10:44511200-44513200	Enhancers	Liver	Liver
14	chr10:44511200-44513200	Enhancers	Fetal Muscle Leg	muscle
15	chr10:44511200-44513200	Enhancers	GM12878-XiMat	blood
16	chr10:44511400-44513400	Enhancers	Stomach Smooth Muscle	stomach
17	chr10:44511400-44513600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:44511400-44513600	Enhancers	Right Atrium	heart
19	chr10:44511600-44513400	Enhancers	Colon Smooth Muscle	Colon
20	chr10:44511600-44513400	Enhancers	Right Ventricle	heart
21	chr10:44511800-44513000	Weak transcription	Pancreas	Pancrea
22	chr10:44511800-44513200	Enhancers	Rectal Smooth Muscle	rectum
23	chr10:44511800-44513600	Enhancers	Left Ventricle	heart
24	chr10:44511800-44537600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:44512000-44512800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:44512000-44513200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:44512000-44513200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr10:44512000-44513400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:44512200-44513400	Enhancers	Duodenum Mucosa	Duodenum
30	chr10:44512200-44513400	Enhancers	NHDF-Ad	bronchial
31	chr10:44512200-44513400	Enhancers	Osteobl	bone
32	chr10:44512400-44512800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:44512400-44512800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:44512400-44516400	Weak transcription	Colonic Mucosa	Colon
35	chr10:44512400-44516400	Weak transcription	Fetal Muscle Trunk	muscle

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