Variant report

Variant	rs17155040
Chromosome Location	chr10:44561922-44561923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44558501..44560332-chr10:44561547..44563769,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1006870	1.00[AFR][1000 genomes]
rs10508879	1.00[AFR][1000 genomes]
rs1114215	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17154727	1.00[AFR][1000 genomes]
rs17154815	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17154842	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17154903	1.00[AFR][1000 genomes]
rs17154929	1.00[AFR][1000 genomes]
rs17154938	1.00[AFR][1000 genomes]
rs17155044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155153	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17155155	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17155193	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17155223	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17155243	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17155274	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17155285	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17155293	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17155296	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17155299	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2086627	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2101160	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2279553	1.00[AFR][1000 genomes]
rs2279554	1.00[AFR][1000 genomes]
rs268299	0.89[ASN][1000 genomes]
rs268300	0.89[ASN][1000 genomes]
rs268301	0.89[ASN][1000 genomes]
rs268327	0.98[ASN][1000 genomes]
rs57549604	1.00[AFR][1000 genomes]
rs72472009	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs956111	1.00[AFR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44558800-44562800	Enhancers	Fetal Stomach	stomach
2	chr10:44559000-44562600	Enhancers	Ovary	ovary
3	chr10:44559000-44563200	Enhancers	Colon Smooth Muscle	Colon
4	chr10:44559000-44563400	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:44559200-44563200	Enhancers	Fetal Muscle Leg	muscle
6	chr10:44559600-44565800	Weak transcription	Right Ventricle	heart
7	chr10:44560600-44562200	Enhancers	Liver	Liver
8	chr10:44560800-44562800	Enhancers	Brain Germinal Matrix	brain
9	chr10:44561000-44562000	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr10:44561400-44562000	Enhancers	Stomach Smooth Muscle	stomach
11	chr10:44561400-44562200	Enhancers	Fetal Lung	lung
12	chr10:44561400-44564200	Weak transcription	Lung	lung
13	chr10:44561600-44562800	Weak transcription	Fetal Kidney	kidney
14	chr10:44561600-44564000	Weak transcription	Pancreas	Pancrea
15	chr10:44561600-44564000	Weak transcription	Right Atrium	heart
16	chr10:44561600-44564000	Weak transcription	NHDF-Ad	bronchial
17	chr10:44561600-44564200	Weak transcription	Left Ventricle	heart
18	chr10:44561600-44564400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:44561600-44564800	Weak transcription	Fetal Brain Male	brain
20	chr10:44561600-44565400	Weak transcription	Brain Angular Gyrus	brain
21	chr10:44561600-44565800	Weak transcription	Aorta	Aorta
22	chr10:44561600-44565800	Weak transcription	Esophagus	oesophagus
23	chr10:44561800-44565200	Weak transcription	Fetal Brain Female	brain

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