Variant report

Variant	rs1114215
Chromosome Location	chr10:44544575-44544576
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44543939..44546432-chr10:44546578..44548267,2	K562	blood:
2	chr10:44537436..44540306-chr10:44543307..44545117,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1006870	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10508879	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1114216	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154727	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17154815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17154842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17154903	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154929	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154938	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17155040	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17155044	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17155153	1.00[AFR][1000 genomes]
rs17155155	1.00[AFR][1000 genomes]
rs17155193	1.00[AFR][1000 genomes]
rs17155223	1.00[AFR][1000 genomes]
rs17468732	0.86[EUR][1000 genomes]
rs2086627	1.00[AFR][1000 genomes]
rs2101160	1.00[AFR][1000 genomes]
rs2279553	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2279554	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57549604	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72472009	1.00[AFR][1000 genomes]
rs956111	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44538200-44547000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44539400-44546800	Weak transcription	Right Ventricle	heart
3	chr10:44540800-44544800	Weak transcription	Lung	lung
4	chr10:44541200-44549800	Weak transcription	Left Ventricle	heart
5	chr10:44542200-44546600	Weak transcription	Fetal Brain Male	brain
6	chr10:44542200-44547000	Weak transcription	Right Atrium	heart
7	chr10:44542400-44547000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:44542400-44547000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:44542400-44552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:44542600-44546200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:44542600-44546600	Weak transcription	Aorta	Aorta
12	chr10:44542600-44546600	Weak transcription	Osteobl	bone
13	chr10:44542600-44546800	Weak transcription	NHDF-Ad	bronchial
14	chr10:44542800-44546600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:44542800-44546600	Weak transcription	NHEK	skin
16	chr10:44543000-44544600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:44543000-44546400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:44543200-44544600	Weak transcription	Fetal Lung	lung
19	chr10:44543200-44544800	Weak transcription	Pancreas	Pancrea
20	chr10:44543200-44545200	Weak transcription	Ovary	ovary
21	chr10:44543200-44546400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:44543200-44547000	Weak transcription	Esophagus	oesophagus
23	chr10:44543200-44552400	Weak transcription	Gastric	stomach
24	chr10:44543400-44544600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:44543400-44546600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:44544400-44546400	Weak transcription	Colon Smooth Muscle	Colon
27	chr10:44544400-44548000	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links