Variant report

Variant	rs2863236
Chromosome Location	chr10:44320813-44320814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11238720	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11238721	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12264669	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12266918	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28475171	0.80[EUR][1000 genomes]
rs2863233	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2863235	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28654354	0.83[EUR][1000 genomes]
rs7071492	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7079939	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7086449	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7087019	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44314600-44323800	Weak transcription	Thymus	Thymus
2	chr10:44314800-44323200	Weak transcription	Gastric	stomach
3	chr10:44315200-44321800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44316400-44321000	Enhancers	Fetal Muscle Leg	muscle
5	chr10:44316400-44321400	Enhancers	Adipose Nuclei	Adipose
6	chr10:44317400-44321200	Enhancers	NHDF-Ad	bronchial
7	chr10:44317800-44321400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:44317800-44321400	Enhancers	Left Ventricle	heart
9	chr10:44318000-44321200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:44318000-44321400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:44318400-44321200	Enhancers	Fetal Heart	heart
12	chr10:44318600-44321000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:44320000-44321200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:44320000-44321200	Enhancers	Fetal Muscle Trunk	muscle
15	chr10:44320000-44322400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr10:44320200-44321000	Weak transcription	Lung	lung
17	chr10:44320400-44321200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:44320400-44321800	Enhancers	Spleen	Spleen
19	chr10:44320400-44322200	Enhancers	Ovary	ovary
20	chr10:44320800-44321000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:44320800-44321000	Flanking Active TSS	Osteobl	bone
22	chr10:44320800-44321200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:44320800-44321200	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr10:44320800-44321200	Flanking Active TSS	NHLF	lung
25	chr10:44320800-44321400	Enhancers	Aorta	Aorta
26	chr10:44320800-44321400	Enhancers	Right Atrium	heart
27	chr10:44320800-44321400	Enhancers	Right Ventricle	heart
28	chr10:44320800-44322200	Enhancers	Skeletal Muscle Female	skeletal muscle

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