Variant report

Variant	rs12549543
Chromosome Location	chr8:107138497-107138498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10095376	0.97[ASN][1000 genomes]
rs10105123	0.97[ASN][1000 genomes]
rs13269602	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13272380	0.97[ASN][1000 genomes]
rs1429671	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1429672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1835265	0.87[AFR][1000 genomes]
rs2115701	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2914863	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2914864	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2914865	0.95[ASN][1000 genomes]
rs2914866	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2914867	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2914868	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2914869	0.82[ASN][1000 genomes]
rs2914870	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2914876	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3019300	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3019301	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3019316	0.95[ASN][1000 genomes]
rs3019317	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734133	0.97[ASN][1000 genomes]
rs4734903	1.00[ASN][1000 genomes]
rs4734904	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6469040	0.87[AFR][1000 genomes]
rs6469042	0.97[ASN][1000 genomes]
rs6469044	0.94[ASN][1000 genomes]
rs7002973	0.86[ASN][1000 genomes]
rs7003090	0.97[ASN][1000 genomes]
rs7461882	0.94[ASN][1000 genomes]
rs7462272	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7463781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7463839	0.97[ASN][1000 genomes]
rs7465106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107123600-107140400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107130000-107140000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:107135600-107140400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107135600-107141200	Weak transcription	Osteobl	bone
5	chr8:107136800-107141400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:107137200-107138800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:107138000-107139000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:107138000-107140000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:107138000-107140600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:107138400-107141600	Enhancers	HUES64 Cell Line	embryonic stem cell

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