Variant report

Variant	rs12549981
Chromosome Location	chr8:50825256-50825257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10112818	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10216383	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12543434	0.86[EUR][1000 genomes]
rs12679386	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13252824	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13271446	0.86[EUR][1000 genomes]
rs1486258	0.80[ASN][1000 genomes]
rs1552380	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17676077	0.86[EUR][1000 genomes]
rs2385554	0.80[ASN][1000 genomes]
rs2449961	0.83[ASN][1000 genomes]
rs318851	0.80[ASN][1000 genomes]
rs318853	0.83[ASN][1000 genomes]
rs36160411	0.86[EUR][1000 genomes]
rs3812424	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3812426	0.83[ASN][1000 genomes]
rs62503966	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6991925	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50821400-50826800	Active TSS	Fetal Brain Male	brain
2	chr8:50821600-50829000	Active TSS	Brain Germinal Matrix	brain
3	chr8:50821800-50827800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr8:50821800-50828600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:50822000-50828400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:50823400-50826800	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr8:50823400-50828400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:50823600-50825600	Active TSS	Brain Angular Gyrus	brain
9	chr8:50824000-50826000	Active TSS	Brain Cingulate Gyrus	brain
10	chr8:50824000-50828600	Active TSS	Brain Anterior Caudate	brain
11	chr8:50824600-50826600	Active TSS	Brain Hippocampus Middle	brain
12	chr8:50824600-50831600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:50824800-50825600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:50824800-50830000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:50825000-50826200	Flanking Active TSS	Fetal Brain Female	brain
16	chr8:50825000-50831800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:50825200-50825400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:50825200-50825400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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